Yixuan Xie (Xixuan Xie)

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 26

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Chemical science

University of California Davis (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of California Davis

United States

PHD :: Chemistry

University of Akron

United States

MSC :: Polymer Science

Lanzhou University

China

BSC :: Chemistry

Publications

Zohreh Izadifar, Justin Cotton, Siyu Chen, Viktor Horváth, Anna Stejskalová, Aakanksha Gulati, Nina T LoGrande, Bogdan Budnik, Sanjid Shahriar, Erin R Doherty, Yixuan Xie, Tania To, Sarah E Gilpin, Adama M Sesay, Girija Goyal, Carlito B Lebrilla, Donald E Ingber
Mucus production, host-microbiome interactions, hormone sensitivity, and innate immune responses modeled in human cervix chips. Nature communications 15 (1) (2024)
Yixuan Xie, Carolina Brás-Costa, Zongtao Lin, Benjamin A Garcia
Mass Spectrometry Analysis of Nucleic Acid Modifications: From Beginning to Future. Mass spectrometry reviews (2024)
Jennifer Porat, Christopher P Watkins, Chunsheng Jin, Yixuan Xie, Xiao Tan, Charlotta G Lebedenko, Helena Hemberger, Woojung Shin, Peiyuan Chai, James J Collins, Benjamin A Garcia, Daniel Bojar, Ryan A Flynn
O-glycosylation contributes to mammalian glycoRNA biogenesis. bioRxiv : the preprint server for biology (2024)
Victoria S Frisbie, Hideharu Hashimoto, Yixuan Xie, Francisca Nathália de Luna Vitorino, Josue Baeza, Tam Nguyen, Zhangerjiao Yuan, Janna Kiselar, Benjamin A Garcia, Erik W Debler
Two DOT1 enzymes cooperatively mediate efficient ubiquitin-independent histone H3 lysine 76 tri-methylation in kinetoplastids. Nature communications 15 (1) (2024)
Zohreh Izadifar, Justin Cotton, Siyu Chen, Viktor Horváth, Anna Stejskalová, Aakanksha Gulati, Nina T LoGrande, Bogdan Budnik, Sanjid Shahriar, Erin R Doherty, Yixuan Xie, Tania To, Sarah E Gilpin, Adama M Sesay, Girija Goyal, Carlito B Lebrilla, Donald E Ingber
Mucus production, host-microbiome interactions, hormone sensitivity, and innate immune responses modeled in human cervix chips. Nature communications 15 (1) (2024)
Xingyu Liu, Ying Zhang, Zhihui Wen, Yan Hao, Charles A S Banks, Joseph Cesare, Saikat Bhattacharya, Shreyas Arvindekar, Jeffrey J Lange, Yixuan Xie, Benjamin A Garcia, Brian D Slaughter, Jay R Uhruh, Shruthi Viswanath, Laurence A Florens, Jerry L Workman, Michael P Washburn
An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome. Proceedings of the National Academy of Sciences of the United States of America 121 (33) (2024)
Xingyu Liu, Ying Zhang, Zhihui Wen, Yan Hao, Charles A S Banks, Joseph Cesare, Saikat Bhattacharya, Shreyas Arvindekar, Jeffrey J Lange, Yixuan Xie, Benjamin A Garcia, Brian D Slaughter, Jay R Uhruh, Shruthi Viswanath, Laurence A Florens, Jerry L Workman, Michael P Washburn
An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome. Proceedings of the National Academy of Sciences of the United States of America 121 (33) (2024)
Victoria S Frisbie, Hideharu Hashimoto, Yixuan Xie, Francisca Nathália de Luna Vitorino, Josue Baeza, Tam Nguyen, Zhangerjiao Yuan, Janna Kiselar, Benjamin A Garcia, Erik W Debler
Two DOT1 enzymes cooperatively mediate efficient ubiquitin-independent histone H3 lysine 76 tri-methylation in kinetoplastids. Nature communications 15 (1) (2024)
Yixuan Xie, Xingyu Liu, Chenfeng Zhao, Siyu Chen, Shunyang Wang, Zongtao Lin, Faith M Robison, Benson M George, Ryan A Flynn, Carlito B Lebrilla, Benjamin A Garcia
Development and application of GlycanDIA workflow for glycomic analysis. bioRxiv : the preprint server for biology (2024)
Xingyu Liu, Ying Zhang, Zhihui Wen, Yan Hao, Charles A S Banks, Joseph Cesare, Saikat Bhattacharya, Shreyas Arvindekar, Jeffrey J Lange, Yixuan Xie, Benjamin A Garcia, Brian D Slaughter, Jay R Uhruh, Shruthi Viswanath, Laurence A Florens, Jerry L Workman, Michael P Washburn
An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome. Proceedings of the National Academy of Sciences of the United States of America 121 (33) (2024)
Victoria S Frisbie, Hideharu Hashimoto, Yixuan Xie, Francisca Nathália de Luna Vitorino, Josue Baeza, Tam Nguyen, Zhangerjiao Yuan, Janna Kiselar, Benjamin A Garcia, Erik W Debler
Two DOT1 enzymes cooperatively mediate efficient ubiquitin-independent histone H3 lysine 76 tri-methylation in kinetoplastids. Nature communications 15 (1) (2024)
Victoria S Frisbie, Hideharu Hashimoto, Yixuan Xie, Francisca Nathália de Luna Vitorino, Josue Baeza, Tam Nguyen, Zhangerjiao Yuan, Janna Kiselar, Benjamin A Garcia, Erik W Debler
Two DOT1 enzymes cooperatively mediate efficient ubiquitin-independent histone H3 lysine 76 tri-methylation in kinetoplastids. Nature communications 15 (1) (2024)
Yixuan Xie, Xingyu Liu, Chenfeng Zhao, Siyu Chen, Shunyang Wang, Zongtao Lin, Faith M Robison, Benson M George, Ryan A Flynn, Carlito B Lebrilla, Benjamin A Garcia
Development and application of GlycanDIA workflow for glycomic analysis. bioRxiv : the preprint server for biology (2024)
Yixuan Xie, Francisca N De Luna Vitorino, Ye Chen, Joanna K Lempiäinen, Chenfeng Zhao, Robert T Steinbock, Zongtao Lin, Xingyu Liu, Emily Zahn, Arabella L Garcia, Matthew D Weitzman, Benjamin A Garcia
SWAMNA: a comprehensive platform for analysis of nucleic acid modifications. Chemical communications (Cambridge, England) (2023)
Michael Russelle S Alvarez, Qingwen Zhou, Jennyfer Tena, Mariana Barboza, Maurice Wong, Yixuan Xie, Carlito B Lebrilla, Michelle Cabanatan, Ma Teresa Barzaga, Nelia Tan-Liu, Francisco M Heralde, Luster Serrano, Ruel C Nacario, Gladys Cherisse J Completo
Glycomic, Glycoproteomic, and Proteomic Profiling of Philippine Lung Cancer and Peritumoral Tissues: Case Series Study of Patients Stages I-III. Cancers 15 (5) (2023)
Richard Lauman, Hee Jong Kim, Lindsay K Pino, Alessandro Scacchetti, Yixuan Xie, Faith Robison, Simone Sidoli, Roberto Bonasio, Benjamin A Garcia
Expanding the Epitranscriptomic RNA Sequencing and Modification Mapping Mass Spectrometry Toolbox with Field Asymmetric Waveform Ion Mobility and Electrochemical Elution Liquid Chromatography. Analytical chemistry (2023)
William J Lu-Culligan, Leah J Connor, Yixuan Xie, Babatunde E Ekundayo, Brendan T Rose, Martin Machyna, Andreas P Pintado-Urbanc, Joshua T Zimmer, Isaac W Vock, Natarajan V Bhanu, Megan C King, Benjamin A Garcia, Franziska Bleichert, Matthew D Simon
Acetyl-methyllysine marks chromatin at active transcription start sites. Nature (2023)
Michael Russelle S Alvarez, Qingwen Zhou, Jennyfer Tena, Mariana Barboza, Maurice Wong, Yixuan Xie, Carlito B Lebrilla, Michelle Cabanatan, Ma Teresa Barzaga, Nelia Tan-Liu, Francisco M Heralde, Luster Serrano, Ruel C Nacario, Gladys Cherisse J Completo
Glycomic, Glycoproteomic, and Proteomic Profiling of Philippine Lung Cancer and Peritumoral Tissues: Case Series Study of Patients Stages I-III. Cancers 15 (5) (2023)
Zongtao Lin, Joanna Gongora, Xingyu Liu, Yixuan Xie, Chenfeng Zhao, Dongwen Lv, Benjamin A Garcia
Automation to Enable High-Throughput Chemical Proteomics. Journal of proteome research (2023)
Kevin A Janssen, Yixuan Xie, Marianne C Kramer, Brian D Gregory, Benjamin A Garcia
Data-Independent Acquisition for the Detection of Mononucleoside RNA Modifications by Mass Spectrometry. Journal of the American Society for Mass Spectrometry 33 (5) (2022)
Qiongyu Li, Yixuan Xie, Rachel Rice, Emanual Maverakis, Carlito B Lebrilla
A proximity labeling method for protein-protein interactions on cell membrane. Chemical science 13 (20) (2022)
Yixuan Xie, Kevin A Janssen, Alessandro Scacchetti, Elizabeth G Porter, Zongtao Lin, Roberto Bonasio, Benjamin A Garcia
Permethylation of Ribonucleosides Provides Enhanced Mass Spectrometry Quantification of Post-Transcriptional RNA Modifications. Analytical chemistry 94 (20) (2022)
Qingwen Zhou, Yixuan Xie, Matthew Lam, Carlito B Lebrilla
N-Glycomic Analysis of the Cell Shows Specific Effects of Glycosyl Transferase Inhibitors. Cells 10 (9) (2021)
Yixuan Xie, Siyu Chen, Qiongyu Li, Ying Sheng, Michael Russelle Alvarez, Joeriggo Reyes, Gege Xu, Kemal Solakyildirim, Carlito B Lebrilla
Glycan-protein cross-linking mass spectrometry reveals sialic acid-mediated protein networks on cell surfaces. Chemical science 12 (25) (2021)
Yixuan Xie, Ying Sheng, Qiongyu Li, Seunghye Ju, Joe Reyes, Carlito B Lebrilla
Determination of the glycoprotein specificity of lectins on cell membranes through oxidative proteomics. Chemical science 11 (35) (2020)
Dionna M Kasper, Jared Hintzen, Yinyu Wu, Joey J Ghersi, Hanna K Mandl, Kevin E Salinas, William Armero, Zhiheng He, Ying Sheng, Yixuan Xie, Daniel W Heindel, Eon Joo Park, William C Sessa, Lara K Mahal, Carlito B Lebrilla, Karen K Hirschi, Stefania Nicoli
The N-glycome regulates the endothelial-to-hematopoietic transition. Science (New York, N.Y.) 370 (6521) (2020)

Yixuan Xie.css-eqlu8i{font-size:small;padding-left:4px;} (Xixuan Xie)

Publication Activity (10 Years)

Top Topics

Top Venues

Yixuan Xie (Xixuan Xie)