Ryan A Flynn

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 21

Top Venues

Nature chemistry

bioRxiv : the preprint server for biology

Nature methods

Nature biotechnology

Stanford University

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stanford University Apr 01 2016

United States

Postdoctoral Fellow :: Chemistry

Education History

Stanford University Jun 01 2012 - Sep 01 2015

United States

PHD :: Cancer Biology

Massachusetts Institute of Technology Sep 01 2006 - May 30 2010

United States

BSC :: Biology

Publications

Jennifer Porat, Christopher P Watkins, Chunsheng Jin, Yixuan Xie, Xiao Tan, Charlotta G Lebedenko, Helena Hemberger, Woojung Shin, Peiyuan Chai, James J Collins, Benjamin A Garcia, Daniel Bojar, Ryan A Flynn
O-glycosylation contributes to mammalian glycoRNA biogenesis. bioRxiv : the preprint server for biology (2024)
Yixuan Xie, Xingyu Liu, Chenfeng Zhao, Siyu Chen, Shunyang Wang, Zongtao Lin, Faith M Robison, Benson M George, Ryan A Flynn, Carlito B Lebrilla, Benjamin A Garcia
Development and application of GlycanDIA workflow for glycomic analysis. bioRxiv : the preprint server for biology (2024)
Yixuan Xie, Xingyu Liu, Chenfeng Zhao, Siyu Chen, Shunyang Wang, Zongtao Lin, Faith M Robison, Benson M George, Ryan A Flynn, Carlito B Lebrilla, Benjamin A Garcia
Development and application of GlycanDIA workflow for glycomic analysis. bioRxiv : the preprint server for biology (2024)
Christopher P Watkins, Ryan A Flynn
A (cross)link in the chains. Nature chemistry 15 (1) (2023)
Christopher P Watkins, Ryan A Flynn
A (cross)link in the chains. Nature chemistry 15 (1) (2023)
Petar Hristov, Ryan A Flynn
Imaging glycosylated RNAs at the subcellular scale. Nature biotechnology (2023)
Christopher P Watkins, Ryan A Flynn
A (cross)link in the chains. Nature chemistry 15 (1) (2023)
Christopher P Watkins, Ryan A Flynn
A (cross)link in the chains. Nature chemistry (2023)
Christopher M Richards, Sabrina Jabs, Wenjie Qiao, Lauren D Varanese, Michaela Schweizer, Peter R Mosen, Nicholas M Riley, Malte Klüssendorf, James R Zengel, Ryan A Flynn, Arjun Rustagi, John C Widen, Christine E Peters, Yaw Shin Ooi, Xuping Xie, Pei-Yong Shi, Vibhu Prasad, Andreas S Puschnik, Matthew M Bogyo, Carolyn R Bertozzi, Catherine A Blish, Dominic Winter, Claude M Nagamine, Thomas Braulke, Jan E Carette
The human disease gene LYSET is essential for lysosomal enzyme transport and viral infection. Science (New York, N.Y.) 378 (6615) (2022)
John V Pluvinage, Jerry Sun, Christel Claes, Ryan A Flynn, Michael S Haney, Tal Iram, Xiangling Meng, Rachel Lindemann, Nicholas M Riley, Emma Danhash, Jean Paul Chadarevian, Emma Tapp, David Gate, Sravani Kondapavulur, Inma Cobos, Sundari Chetty, Anca M Pașca, Sergiu P Pașca, Elizabeth M Berry-Kravis, Carolyn R Bertozzi, Mathew Blurton Jones, Tony Wyss-Coray
The CD22-IGF2R interaction is a therapeutic target for microglial lysosome dysfunction in Niemann-Pick type C. Science translational medicine 13 (622) (2021)
Ameen A Salahudeen, Shannon S Choi, Arjun Rustagi, Junjie Zhu, Vincent van Unen, Sean M de la O, Ryan A Flynn, Mar Margalef-Català, António J M Santos, Jihang Ju, Arpit Batish, Tatsuya Usui, Grace X Y Zheng, Caitlin E Edwards, Lisa E Wagar, Vincent Luca, Benedict Anchang, Monica Nagendran, Khanh Nguyen, Daniel J Hart, Jessica M Terry, Phillip Belgrader, Solongo B Ziraldo, Tarjei S Mikkelsen, Pehr B Harbury, Jeffrey S Glenn, K Christopher Garcia, Mark M Davis, Ralph S Baric, Chiara Sabatti, Manuel R Amieva, Catherine A Blish, Tushar J Desai, Calvin J Kuo
Progenitor identification and SARS-CoV-2 infection in human distal lung organoids. Nature 588 (7839) (2020)
Ameen A Salahudeen, Shannon S Choi, Arjun Rustagi, Junjie Zhu, Sean M de la O, Ryan A Flynn, Mar Margalef-Català, António J M Santos, Jihang Ju, Arpit Batish, Vincent van Unen, Tatsuya Usui, Grace X Y Zheng, Caitlin E Edwards, Lisa E Wagar, Vincent C Luca, Benedict Anchang, Monica Nagendran, Khanh Nguyen, Daniel J Hart, Jessica M Terry, Phillip Belgrader, Solongo B Ziraldo, Tarjei S Mikkelsen, Pehr A B Harbury, Jeffrey S Glenn, K Christopher Garcia, Mark M Davis, Ralph S Baric, Chiara Sabatti, Manuel R Amieva, Catherine A Blish, Tushar J Desai, Calvin J Kuo
Progenitor identification and SARS-CoV-2 infection in long-term human distal lung organoid cultures. bioRxiv : the preprint server for biology (2020)
Cristina Santoriello, Audrey Sporrij, Song Yang, Ryan A Flynn, Telmo Henriques, Bilguujin Dorjsuren, Eugenia Custo Greig, Wyatt McCall, Meredith E Stanhope, Maurizio Fazio, Michael Superdock, Asher Lichtig, Isaac Adatto, Brian J Abraham, Marian Kalocsay, Michael Jurynec, Yi Zhou, Karen Adelman, Eliezer Calo, Leonard I Zon
RNA helicase DDX21 mediates nucleotide stress responses in neural crest and melanoma cells. Nature cell biology 22 (4) (2020)
Maxwell R Mumbach, Jeffrey M Granja, Ryan A Flynn, Caitlin M Roake, Ansuman T Satpathy, Adam J Rubin, Yanyan Qi, Zhaozhao Jiang, Shadi Shams, Bryan H Louie, Jimmy K Guo, David G Gennert, M Ryan Corces, Paul A Khavari, Maninjay K Atianand, Steven E Artandi, Katherine A Fitzgerald, William J Greenleaf, Howard Y Chang
HiChIRP reveals RNA-associated chromosome conformation. Nature methods 16 (6) (2019)
Mohammad S Esfahani, Luke J Lee, Young-Jun Jeon, Ryan A Flynn, Henning Stehr, Angela B Hui, Noriko Ishisoko, Eric Kildebeck, Aaron M Newman, Scott V Bratman, Matthew H Porteus, Howard Y Chang, Ash A Alizadeh, Maximillian Diehn
Functional significance of U2AF1 S34F mutations in lung adenocarcinomas. Nature communications 10 (1) (2019)
Yaw Shin Ooi, Karim Majzoub, Ryan A Flynn, Miguel A Mata, Jonathan Diep, Jason Kenichi Li, Nicholas van Buuren, Neil Rumachik, Alex G Johnson, Andreas S Puschnik, Caleb D Marceau, Luwanika Mlera, Jeffrey M Grabowski, Karla Kirkegaard, Marshall E Bloom, Peter Sarnow, Carolyn R Bertozzi, Jan E Carette
An RNA-centric dissection of host complexes controlling flavivirus infection. Nature microbiology 4 (12) (2019)
Ryan A Flynn, Brian T Do, Adam J Rubin, Eliezer Calo, Byron Lee, Hannes Kuchelmeister, Michael Rale, Ci Chu, Eric T Kool, Joanna Wysocka, Paul A Khavari, Howard Y Chang
7SK-BAF axis controls pervasive transcription at enhancers. Nature structural & molecular biology 23 (3) (2016)
Byron Lee, Ryan A Flynn, Anastasia Kadina, Jimmy K Guo, Eric T Kool, Howard Y Chang
Comparison of SHAPE reagents for mapping RNA structures inside living cells. RNA (New York, N.Y.) 23 (2) (2016)
Maxwell R Mumbach, Adam J Rubin, Ryan A Flynn, Chao Dai, Paul A Khavari, William J Greenleaf, Howard Y Chang
HiChIP: efficient and sensitive analysis of protein-directed genome architecture. Nature methods 13 (11) (2016)
Ryan A Flynn, Qiangfeng Cliff Zhang, Robert C Spitale, Byron Lee, Maxwell R Mumbach, Howard Y Chang
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE. Nature protocols 11 (2) (2016)
Brian J Zarnegar, Ryan A Flynn, Ying Shen, Brian T Do, Howard Y Chang, Paul A Khavari
irCLIP platform for efficient characterization of protein-RNA interactions. Nature methods 13 (6) (2016)

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Publication Activity (10 Years)

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Ryan A Flynn