Yong Zhang

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 19

Top Topics

Convolutional Neural Network

Gene Expression

Top Venues

GigaByte (Hong Kong, China)

Genome research

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Lei Cao, Chao Yang, Luni Hu, Wenjian Jiang, Yating Ren, Tianyi Xia, Mengyang Xu, Yishuai Ji, Mei Li, Xue Liu, Yuxiang Li, Yong Zhang, Shuangsang Fang
Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder. GigaScience 13 (1) (2024)
Bohan Zhang, Mei Li, Qiang Kang, Zhonghan Deng, Hua Qin, Kui Su, Xiuwen Feng, Lichuan Chen, Huanlin Liu, Shuangsang Fang, Yong Zhang, Yuxiang Li, Susanne B Pedersen, Xue Liu
Generating single-cell gene expression profiles for high-resolution spatial transcriptomics based on cell boundary images. GigaByte (Hong Kong, China) 2024 (2024)
Tongxuan Lv, Ying Zhang, Mei Li, Qiang Kang, Shuangsang Fang, Yong Zhang, Susanne B Pedersen, Xue Liu
EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics. GigaScience 13 (1) (2024)
Xiaolong Luo, Yuxin Chen, Ling Liu, Lulu Ding, Yuxiang Li, Shengkang Li, Yong Zhang, Zexuan Zhu
GSC: efficient lossless compression of VCF files with fast query. GigaScience 13 (2024)
Chao Zhang, Lin Liu, Ying Zhang, Mei Li, Shuangsang Fang, Qiang Kang, Ao Chen, Xue Liu, Yong Zhang, Yuxiang Li
spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics. GigaScience 13 (2024)
Xiaolong Luo, Yuxin Chen, Ling Liu, Lulu Ding, Yuxiang Li, Shengkang Li, Yong Zhang, Zexuan Zhu
GSC: efficient lossless compression of VCF files with fast query. GigaScience 13 (2024)
Xiaolong Luo, Yuxin Chen, Ling Liu, Lulu Ding, Yuxiang Li, Shengkang Li, Yong Zhang, Zexuan Zhu
GSC: efficient lossless compression of VCF files with fast query. GigaScience 13 (2024)
Chao Zhang, Lin Liu, Ying Zhang, Mei Li, Shuangsang Fang, Qiang Kang, Ao Chen, Xue Liu, Yong Zhang, Yuxiang Li
spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics. GigaScience 13 (2024)
Tongxuan Lv, Ying Zhang, Mei Li, Qiang Kang, Shuangsang Fang, Yong Zhang, Susanne B Pedersen, Xue Liu
EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics. GigaScience 13 (1) (2024)
Lei Cao, Chao Yang, Luni Hu, Wenjian Jiang, Yating Ren, Tianyi Xia, Mengyang Xu, Yishuai Ji, Mei Li, Xue Liu, Yuxiang Li, Yong Zhang, Shuangsang Fang
Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder. GigaScience 13 (1) (2024)
Chao Zhang, Lin Liu, Ying Zhang, Mei Li, Shuangsang Fang, Qiang Kang, Ao Chen, Xue Liu, Yong Zhang, Yuxiang Li
spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics. GigaScience 13 (2024)
Tongxuan Lv, Ying Zhang, Mei Li, Qiang Kang, Shuangsang Fang, Yong Zhang, Susanne B Pedersen, Xue Liu
EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics. GigaScience 13 (1) (2024)
Tongxuan Lv, Ying Zhang, Mei Li, Qiang Kang, Shuangsang Fang, Yong Zhang, Susanne B Pedersen, Xue Liu
EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics. GigaScience 13 (1) (2024)
Tianyi Xia, Luni Hu, Lulu Zuo, Lei Cao, Yunjia Zhang, Mengyang Xu, Qin Lu, Lei Zhang, Taotao Pan, Bohan Zhang, Bowen Ma, Chuan Chen, Junfu Guo, Chang Shi, Mei Li, Chao Liu, Yuxiang Li, Yong Zhang, Shuangsang Fang
ST-GEARS: Advancing 3D downstream research through accurate spatial information recovery. Nature communications 15 (1) (2024)
Lei Cao, Chao Yang, Luni Hu, Wenjian Jiang, Yating Ren, Tianyi Xia, Mengyang Xu, Yishuai Ji, Mei Li, Xue Liu, Yuxiang Li, Yong Zhang, Shuangsang Fang
Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder. GigaScience 13 (1) (2024)
Bohan Zhang, Mei Li, Qiang Kang, Zhonghan Deng, Hua Qin, Kui Su, Xiuwen Feng, Lichuan Chen, Huanlin Liu, Shuangsang Fang, Yong Zhang, Yuxiang Li, Susanne B Pedersen, Xue Liu
Generating single-cell gene expression profiles for high-resolution spatial transcriptomics based on cell boundary images. GigaByte (Hong Kong, China) 2024 (2024)
Lei Cao, Chao Yang, Luni Hu, Wenjian Jiang, Yating Ren, Tianyi Xia, Mengyang Xu, Yishuai Ji, Mei Li, Xue Liu, Yuxiang Li, Yong Zhang, Shuangsang Fang
Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder. GigaScience 13 (1) (2024)
Zhicheng Xu, Weiwen Wang, Tao Yang, Ling Li, Xizheng Ma, Jing Chen, Jieyu Wang, Yan Huang, Joshua Gould, Huifang Lu, Wensi Du, Sunil Kumar Sahu, Fan Yang, Zhiyong Li, Qingjiang Hu, Cong Hua, Shoujie Hu, Yiqun Liu, Jia Cai, Lijin You, Yong Zhang, YuXiang Li, Wenjun Zeng, Ao Chen, Bo Wang, Longqi Liu, Fengzhen Chen, Kailong Ma, Xue Liu, Xiaofeng Wei
STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization. Nucleic acids research (2023)
Huixin Xu, Qi Zhen, Mingzhou Bai, Lin Fang, Yong Zhang, Bao Li, Huiyao Ge, Sunjin Moon, Weiwei Chen, Wenqing Fu, Qiongqiong Xu, Yuwen Zhou, Yafeng Yu, Long Lin, Liang Yong, Tao Zhang, Shirui Chen, Siyang Liu, Hui Zhang, Ruoyan Chen, Lu Cao, Yuanwei Zhang, Ruixue Zhang, Huanjie Yang, Xia Hu, Joshua M Akey, Xin Jin, Liangdan Sun
Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals. Genome research (2021)