Yujun Cui

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 18

Top Topics

Antimicrobial Resistance

Listeria Monocytogenes

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

NAR genomics and bioinformatics

Microbiology spectrum

This page only lists publications with an associated author ORCID identifier.

Publications

Ying Xiang, Kunpeng Zhu, Kaiyuan Min, Yaowen Zhang, Jiangfeng Liu, Kangkang Liu, Yiran Han, Xinge Li, Xinying Du, Xin Wang, Ying Huang, Xinping Li, Yuqian Peng, Chaojie Yang, Hongbo Liu, Hongbo Liu, Xiaoying Li, Hui Wang, Chao Wang, Qi Wang, Huiqun Jia, Mingjuan Yang, Ligui Wang, Yarong Wu, Yujun Cui, Fei Chen, Haiyan Yang, Megan E Carey, Xuebin Xu, Jun-Tao Yang, Hongbin Song, Shaofu Qiu
Characterization of a Salmonella enterica serovar Typhimurium lineage with rough colony morphology and multidrug resistance. Nature communications 15 (1) (2024)
Ying Xiang, Kunpeng Zhu, Kaiyuan Min, Yaowen Zhang, Jiangfeng Liu, Kangkang Liu, Yiran Han, Xinge Li, Xinying Du, Xin Wang, Ying Huang, Xinping Li, Yuqian Peng, Chaojie Yang, Hongbo Liu, Hongbo Liu, Xiaoying Li, Hui Wang, Chao Wang, Qi Wang, Huiqun Jia, Mingjuan Yang, Ligui Wang, Yarong Wu, Yujun Cui, Fei Chen, Haiyan Yang, Megan E Carey, Xuebin Xu, Jun-Tao Yang, Hongbin Song, Shaofu Qiu
Characterization of a Salmonella enterica serovar Typhimurium lineage with rough colony morphology and multidrug resistance. Nature communications 15 (1) (2024)
Ying Xiang, Kunpeng Zhu, Kaiyuan Min, Yaowen Zhang, Jiangfeng Liu, Kangkang Liu, Yiran Han, Xinge Li, Xinying Du, Xin Wang, Ying Huang, Xinping Li, Yuqian Peng, Chaojie Yang, Hongbo Liu, Hongbo Liu, Xiaoying Li, Hui Wang, Chao Wang, Qi Wang, Huiqun Jia, Mingjuan Yang, Ligui Wang, Yarong Wu, Yujun Cui, Fei Chen, Haiyan Yang, Megan E Carey, Xuebin Xu, Jun-Tao Yang, Hongbin Song, Shaofu Qiu
Characterization of a Salmonella enterica serovar Typhimurium lineage with rough colony morphology and multidrug resistance. Nature communications 15 (1) (2024)
Xiuwei Qian, Yarong Wu, Xiujuan Zuo, Xin Peng, Yan Guo, Ruifu Yang, Xianglilan Zhang, Yujun Cui
mStrain: strain-level identification of Yersinia pestis using metagenomic data. Bioinformatics advances 3 (1) (2023)
Zhu-Hong You, Wending Pi, Wenjuan Liu, Yannan Liu, Yujun Cui, Xianglilan Zhang, Shaoliang Peng
HyperVR: a hybrid deep ensemble learning approach for simultaneously predicting virulence factors and antibiotic resistance genes. NAR genomics and bioinformatics 5 (1) (2023)
Zhu-Hong You, Wending Pi, Wenjuan Liu, Yannan Liu, Yujun Cui, Xianglilan Zhang, Shaoliang Peng
HyperVR: a hybrid deep ensemble learning approach for simultaneously predicting virulence factors and antibiotic resistance genes. NAR genomics and bioinformatics 5 (1) (2023)
Lingyue Yang, Zengmiao Wang, Lin Wang, Bram Vrancken, Ruixue Wang, Yuanlong Wei, Benjamin Rader, Chieh-Hsi Wu, Yuyang Chen, Peiyi Wu, Bingying Li, Qiushi Lin, Lu Dong, Yujun Cui, Mang Shi, John S Brownstein, Nils Christian Stenseth, Ruifu Yang, Huaiyu Tian
Association of vaccination, international travel, public health and social measures with lineage dynamics of SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America 120 (33) (2023)
Jingliang Qin, Liyuan Shi, Yarong Wu, Jinjiao Kong, Xiuwei Qian, Xianglilan Zhang, Xiujuan Zuo, Hang Fan, Yan Guo, Mengnan Cui, Shanshan Dong, Hongli Tan, Youhong Zhong, Yajun Song, Ruifu Yang, Peng Wang, Yujun Cui
Genomic epidemiological analysis of county-scale Yersinia pestis spread pattern over 50 years in a Southwest Chinese prefecture. PLoS neglected tropical diseases 17 (8) (2023)
Jingliang Qin, Yarong Wu, Liyuan Shi, Xiujuan Zuo, Xianglilan Zhang, Xiuwei Qian, Hang Fan, Yan Guo, Mengnan Cui, Haipeng Zhang, Fengyi Yang, Jinjiao Kong, Ya-Jun Song, Ruifu Yang, Peng Wang, Yujun Cui
Genomic diversity of Yersinia pestis from Yunnan Province, China, implies a potential common ancestor as the source of two plague epidemics. Communications biology 6 (1) (2023)
Nils Christian Stenseth, Yuxin Tao, Chutian Zhang, Barbara Bramanti, Ulf Büntgen, Xianbin Cong, Yujun Cui, Hu Zhou, Lorna A Dawson, Sacha J Mooney, Dong Li, Henry Gillies Fell, Samuel Kline Cohn, Florent Sebbane, Philip Slavin, Wannian Liang, Howell Tong, Ruifu Yang, Lei Xu
No evidence for persistent natural plague reservoirs in historical and modern Europe. Proceedings of the National Academy of Sciences of the United States of America 119 (51) (2022)
Yarong Wu, Tongyu Hao, Xiuwei Qian, Xianglilan Zhang, Ya-Jun Song, Ruifu Yang, Yujun Cui
Small Insertions and Deletions Drive Genomic Plasticity during Adaptive Evolution of Yersinia pestis. Microbiology spectrum 10 (3) (2022)
Nils Christian Stenseth, Yuxin Tao, Chutian Zhang, Barbara Bramanti, Ulf Büntgen, Xianbin Cong, Yujun Cui, Hu Zhou, Lorna A Dawson, Sacha J Mooney, Dong Li, Henry Gillies Fell, Samuel Kline Cohn, Florent Sebbane, Philip Slavin, Wannian Liang, Howell Tong, Ruifu Yang, Lei Xu
No evidence for persistent natural plague reservoirs in historical and modern Europe. Proceedings of the National Academy of Sciences of the United States of America 119 (51) (2022)
Nils Christian Stenseth, Yuxin Tao, Chutian Zhang, Barbara Bramanti, Ulf Büntgen, Xianbin Cong, Yujun Cui, Hu Zhou, Lorna A Dawson, Sacha J Mooney, Dong Li, Henry Gillies Fell, Samuel Kline Cohn, Florent Sebbane, Philip Slavin, Wannian Liang, Howell Tong, Ruifu Yang, Lei Xu
No evidence for persistent natural plague reservoirs in historical and modern Europe. Proceedings of the National Academy of Sciences of the United States of America 119 (51) (2022)
Shiyang Cao, Yang Jiao, Wei Jiang, Yarong Wu, Si Qin, Yifan Ren, Yang You, Yafang Tan, Xiao Guo, Hongyan Chen, Yuan Zhang, Gengshan Wu, Tong Wang, Yazhou Zhou, Ya-Jun Song, Yujun Cui, Feng Shao, Ruifu Yang, Zongmin Du
Subversion of GBP-mediated host defense by E3 ligases acquired during Yersinia pestis evolution. Nature communications 13 (1) (2022)
Chao Yang, Yinghui Li, Min Jiang, Lei Wang, Yixiang Jiang, Lulu Hu, Xiaolu Shi, Lianhua He, Rui Cai, Shuang Wu, Yaqun Qiu, Linying Lu, Le Zuo, Qiongcheng Chen, Yarong Wu, Jaime Martinez-Urtaza, Chengsong Wan, Ruifu Yang, Yujun Cui, Qinghua Hu
Outbreak dynamics of foodborne pathogen Vibrio parahaemolyticus over a seventeen year period implies hidden reservoirs. Nature microbiology 7 (8) (2022)
Barbara Bramanti, Yarong Wu, Ruifu Yang, Yujun Cui, Nils Christian Stenseth
Assessing the origins of the European Plagues following the Black Death: A synthesis of genomic, historical, and ecological information. Proceedings of the National Academy of Sciences of the United States of America 118 (36) (2022)
Nils Christian Stenseth, Yuxin Tao, Chutian Zhang, Barbara Bramanti, Ulf Büntgen, Xianbin Cong, Yujun Cui, Hu Zhou, Lorna A Dawson, Sacha J Mooney, Dong Li, Henry Gillies Fell, Samuel Kline Cohn, Florent Sebbane, Philip Slavin, Wannian Liang, Howell Tong, Ruifu Yang, Lei Xu
No evidence for persistent natural plague reservoirs in historical and modern Europe. Proceedings of the National Academy of Sciences of the United States of America 119 (51) (2022)
Hongjing Gu, Qi Chen, Guan Yang, Lei He, Hang Fan, Yong-Qiang Deng, Yanxiao Wang, Yue Teng, Zhongpeng Zhao, Yujun Cui, Yuchang Li, Xiao-Feng Li, Jiangfan Li, Na-Na Zhang, Xiaolan Yang, Shaolong Chen, Yan Guo, Guang-Yu Zhao, Xiliang Wang, De-Yan Luo, Hui Wang, Guan Yang, Yan Li, Gencheng Han, Yuxian He, Xiaojun Zhou, Shusheng Geng, Xiaoli Sheng, Shibo Jiang, Shihui Sun, Cheng-Feng Qin, Yusen Zhou
Adaptation of SARS-CoV-2 in BALB/c mice for testing vaccine efficacy. Science (New York, N.Y.) 369 (6511) (2020)