Zhongchi Liu

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 59

Top Topics

Transcription Factor

Arabidopsis Thaliana

Top Venues

Plant physiology

Horticulture research

Development (Cambridge, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Yazhou Yang, Jia Liu, Stacy D Singer, Guohua Yan, Dennis R Bennet, Yue Liu, Jean-Michel Hily, Weirong Xu, Yingzhen Yang, Xiping Wang, Gan-Yuan Zhong, Zhongchi Liu, Yong-Qiang Charles An, Huawei Liu, Zongrang Liu
Ectopic enhancer-enhancer interactions as causal forces driving RNA-directed DNA methylation in gene regulatory regions. Plant biotechnology journal (2024)
Patricio Pérez-Henríquez, Hongjiang Li, Xiang Zhou, Xue Pan, Wenwei Lin, Wenxin Tang, Shingo Nagawa, Deshu Lin, Tongda Xu, Marta Michniewicz, Michael J Prigge, Lucia C Strader, Mark Estelle, Ken-Ishiro Hayashi, Jiří Friml, Linlin Qi, Zhongchi Liu, Jaimie M Van Norman, Zhenbiao Yang
Hierarchical global and local auxin signals coordinate cellular interdigitation in Arabidopsis . bioRxiv : the preprint server for biology (2024)
Yafan Han, Minghao Qu, Zhongchi Liu, Chunying Kang
Transcription factor FveMYB117a inhibits axillary bud outgrowth by regulating cytokinin homeostasis in woodland strawberry. The Plant cell 36 (6) (2024)
Yafan Han, Minghao Qu, Zhongchi Liu, Chunying Kang
Transcription factor FveMYB117a inhibits axillary bud outgrowth by regulating cytokinin homeostasis in woodland strawberry. The Plant cell 36 (6) (2024)
Yafan Han, Minghao Qu, Zhongchi Liu, Chunying Kang
Transcription factor FveMYB117a inhibits axillary bud outgrowth by regulating cytokinin homeostasis in woodland strawberry. The Plant cell (2024)
Yoon Jeong Jang, Taehoon Kim, Makou Lin, Jeong Im Kim, Kevin Begcy, Zhongchi Liu, Seonghee Lee
Genome-wide gene network uncover temporal and spatial changes of genes in auxin homeostasis during fruit development in strawberry (F. × ananassa). BMC plant biology 24 (1) (2024)
Patricio Pérez-Henríquez, Hongjiang Li, Xiang Zhou, Xue Pan, Wenwei Lin, Wenxin Tang, Shingo Nagawa, Deshu Lin, Tongda Xu, Marta Michniewicz, Michael J Prigge, Lucia C Strader, Mark Estelle, Ken-Ishiro Hayashi, Jiří Friml, Linlin Qi, Zhongchi Liu, Jaimie M Van Norman, Zhenbiao Yang
Hierarchical global and local auxin signals coordinate cellular interdigitation in Arabidopsis . bioRxiv : the preprint server for biology (2024)
Patricio Pérez-Henríquez, Shingo Nagawa, Zhongchi Liu, Xue Pan, Marta Michniewicz, Wenxin Tang, Carolyn G Rasmussen, Jaimie M Van Norman, Lucia C Strader, Zhenbiao Yang
PIN2-mediated self-organizing transient auxin flow contributes to auxin maxima at the tip of Arabidopsis cotyledons. bioRxiv : the preprint server for biology (2024)
Yafan Han, Minghao Qu, Zhongchi Liu, Chunying Kang
Transcription factor FveMYB117a inhibits axillary bud outgrowth by regulating cytokinin homeostasis in woodland strawberry. The Plant cell 36 (6) (2024)
Patricio Pérez-Henríquez, Shingo Nagawa, Zhongchi Liu, Xue Pan, Marta Michniewicz, Wenxin Tang, Carolyn G Rasmussen, Jaimie M Van Norman, Lucia C Strader, Zhenbiao Yang
PIN2-mediated self-organizing transient auxin flow contributes to auxin maxima at the tip of Arabidopsis cotyledons. bioRxiv : the preprint server for biology (2024)
Patricio Pérez-Henríquez, Hongjiang Li, Xiang Zhou, Xue Pan, Wenwei Lin, Wenxin Tang, Shingo Nagawa, Deshu Lin, Tongda Xu, Marta Michniewicz, Michael J Prigge, Lucia C Strader, Mark Estelle, Ken-Ishiro Hayashi, Jiří Friml, Linlin Qi, Zhongchi Liu, Jaimie M Van Norman, Zhenbiao Yang
Hierarchical global and local auxin signals coordinate cellular interdigitation in Arabidopsis . bioRxiv : the preprint server for biology (2024)
Yafan Han, Minghao Qu, Zhongchi Liu, Chunying Kang
Transcription factor FveMYB117a inhibits axillary bud outgrowth by regulating cytokinin homeostasis in woodland strawberry. The Plant cell 36 (6) (2024)
Muzi Li, Stephen M Mount, Zhongchi Liu
Rosaceae fruit transcriptome database (ROFT)-a useful genomic resource for comparing fruits of apple, peach, strawberry, and raspberry. Horticulture research 10 (12) (2023)
Qi Gao, Shaoqiang Hu, Xiaoli Wang, Fu Han, Huifeng Luo, Zhongchi Liu, Chunying Kang
The red/far-red light photoreceptor FvePhyB regulates tissue elongation and anthocyanin accumulation in woodland strawberry. Horticulture research 10 (12) (2023)
Jiaming Li, Rongxiang Zhu, Mingyue Zhang, Beibei Cao, Xiaolong Li, Bobo Song, Zhongchi Liu, Jun Wu
Natural variations in the PbCPK28 promoter regulate sugar content through interaction with PbTST4 and PbVHA-A1 in pear. The Plant journal : for cell and molecular biology (2023)
Junhui Zhou, Muzi Li, Yongping Li, Yuwei Xiao, Xi Luo, Shenglan Gao, Zhimin Ma, Norah Sadowski, Winston Timp, Christopher Dardick, Ann M Callahan, Stephen M Mount, Zhongchi Liu
Comparison of red raspberry and wild strawberry fruits reveals mechanisms of fruit type specification. Plant physiology (2023)
Fuxi Wang, Wanpeng Wang, Zhongchi Liu
Cyclin A participates in the TSO1-MYB3R1 regulatory module to maintain shoot meristem size and fertility in Arabidopsis. Development (Cambridge, England) 150 (5) (2023)
Yunming Zhang, Lijun Kan, Shaoqiang Hu, Zhongchi Liu, Chunying Kang
Roles and evolution of four LEAFY homologs in floral patterning and leaf development in woodland strawberry. Plant physiology (2023)
Muzi Li, Stephen M Mount, Zhongchi Liu
Rosaceae fruit transcriptome database (ROFT)-a useful genomic resource for comparing fruits of apple, peach, strawberry, and raspberry. Horticulture research 10 (12) (2023)
Fuxi Wang, Wanpeng Wang, Zhongchi Liu
Cyclin a participates in the TSO1-MYB3R1 regulatory module to maintain shoot meristem size and fertility in Arabidopsis. Development (Cambridge, England) (2023)
Rui Lu, Mengting Pi, Zhongchi Liu, Chunying Kang
Auxin biosynthesis gene FveYUC4 is critical for leaf and flower morphogenesis in woodland strawberry. The Plant journal : for cell and molecular biology (2023)
Fuxi Wang, Wanpeng Wang, Zhongchi Liu
Cyclin A participates in the TSO1-MYB3R1 regulatory module to maintain shoot meristem size and fertility in Arabidopsis. Development (Cambridge, England) 150 (5) (2023)
Xi Luo, Madison Plunkert, Zi Teng, Katarzyna Kuligowska, Lei Guo, Yaguang Luo, Timo P Hytönen, Zhongchi Liu
Two MYB activators of anthocyanin biosynthesis exhibit specialized activities in petiole and fruit of diploid strawberry. Journal of experimental botany 74 (5) (2023)
Jiaming Li, Rongxiang Zhu, Mingyue Zhang, Beibei Cao, Xiaolong Li, Bobo Song, Zhongchi Liu, Jun Wu
Natural variations in the PbCPK28 promoter regulate sugar content through interaction with PbTST4 and PbVHA-A1 in pear. The Plant journal : for cell and molecular biology (2023)
Zhongchi Liu, Tong Liang, Chunying Kang
Molecular bases of strawberry fruit quality traits: advances, challenges, and opportunities. Plant physiology (2023)
Fuxi Wang, Wanpeng Wang, Zhongchi Liu
Cyclin A participates in the TSO1-MYB3R1 regulatory module to maintain shoot meristem size and fertility in Arabidopsis. Development (Cambridge, England) 150 (5) (2023)
Fuxi Wang, Wanpeng Wang, Zhongchi Liu
Cyclin A participates in the TSO1-MYB3R1 regulatory module to maintain shoot meristem size and fertility in Arabidopsis. Development (Cambridge, England) 150 (5) (2023)
Mengting Pi, Ruhan Zhong, Shaoqiang Hu, Zhuoying Cai, Madison Plunkert, Weiyi Zhang, Zhongchi Liu, Chunying Kang
A GT-1 and PKc domain-containing transcription regulator SIMPLE LEAF1 controls compound leaf development in woodland strawberry. The New phytologist (2022)
Xi Luo, Madison Plunkert, Zi Teng, Katarzyna Kuligowska, Lei Guo, Yaguang Luo, Timo Hytönen, Zhongchi Liu
Two MYB activators of anthocyanin biosynthesis exhibit specialized activities in petiole and fruit of diploid strawberry. Journal of experimental botany (2022)
John Sittmann, Munhyung Bae, Emily Mevers, Muzi Li, Andrew Quinn, Ganesh Sriram, Jon Clardy, Zhongchi Liu
Bacterial diketopiperazines stimulate diatom growth and lipid accumulation. Plant physiology 186 (2) (2022)
Guanghui Zheng, Shaoqiang Hu, Simin Cheng, Liyang Wang, Lijun Kan, Zhengming Wang, Qiang Xu, Zhongchi Liu, Chunying Kang
Factor of DNA Methylation 1 affects woodland strawberry plant stature and organ size via DNA methylation. Plant physiology (2022)
Javier Andrés, Julie C Caruana, Jia-Hui Liang, Samia Samad, Amparo Monfort, Zhongchi Liu, Timo Hytönen, Elli A Koskela
Woodland strawberry axillary bud fate is dictated by a crosstalk of environmental and endogenous factors. Plant physiology 187 (3) (2022)
Jia Feng, Laichao Cheng, Zhenying Zhu, Feiqi Yu, Cheng Dai, Zhongchi Liu, Wen-Wu Guo, Xiao-Meng Wu, Chunying Kang
GRAS transcription factor LOSS OF AXILLARY MERISTEMS is essential for stamen and runner formation in wild strawberry. Plant physiology 186 (4) (2022)
Lei Guo, Xi Luo, Muzi Li, Dirk Joldersma, Madison Plunkert, Zhongchi Liu
Mechanism of fertilization-induced auxin synthesis in the endosperm for seed and fruit development. Nature communications 13 (1) (2022)
Tianjia Liu, Muzi Li, Zhongchi Liu, Xiaoyan Ai, Yongping Li
Reannotation of the cultivated strawberry genome and establishment of a strawberry genome database. Horticulture research 8 (1) (2021)
Javier Andrés, Julie C Caruana, Jia-Hui Liang, Samia Samad, Amparo Monfort, Zhongchi Liu, Timo Hytönen, Elli A Koskela
Erratum to: Woodland strawberry axillary bud fate is dictated by a crosstalk of environmental and endogenous factors. Plant physiology (2021)
Mengting Pi, Shaoqiang Hu, Laichao Cheng, Ruhan Zhong, Zhuoying Cai, Zhongchi Liu, Jia-Long Yao, Chunying Kang
The MADS-box gene FveSEP3 plays essential roles in flower organogenesis and fruit development in woodland strawberry. Horticulture research 8 (1) (2021)
Muzi Li, Kelsey Galimba, Yuwei Xiao, Chris Dardick, Stephen M Mount, Ann Callahan, Zhongchi Liu
Comparative transcriptomic analysis of apple and peach fruits: insights into fruit type specification. The Plant journal : for cell and molecular biology 109 (6) (2021)
Cristina Castillejo, Veronika Waurich, Henning Wagner, Rubén Ramos, Nicolás Oiza, Pilar Muñoz, Juan Carlos Triviño, Julie C Caruana, Zhongchi Liu, Nicolás Cobo, Michael A Hardigan, Steven J Knapp, José G Vallarino, Sonia Osorio, Carmen Martín-Pizarro, David Posé, Tuomas Toivainen, Timo P Hytönen, Youngjae Oh, Christopher R Barbey, Vance M Whitaker, Seonghee Lee, Klaus Olbricht, José F Sánchez-Sevilla, Iraida Amaya
Allelic Variation of MYB10 Is the Major Force Controlling Natural Variation in Skin and Flesh Color in Strawberry (Fragaria spp.) Fruit. The Plant cell 32 (12) (2020)
Qi Gao, Huifeng Luo, Yongping Li, Zhongchi Liu, Chunying Kang
Genetic modulation of RAP alters fruit coloration in both wild and cultivated strawberry. Plant biotechnology journal 18 (7) (2020)
Abigail R Simmons, Kelli A Davies, Wanpeng Wang, Zhongchi Liu, Dominique C Bergmann
SOL1 and SOL2 regulate fate transition and cell divisions in the Arabidopsis stomatal lineage. Development (Cambridge, England) 146 (3) (2019)
Guanghui Zheng, Wei Wei, Yongping Li, Lijun Kan, Fuxi Wang, Xi Zhang, Feng Li, Zhongchi Liu, Chunying Kang
Conserved and novel roles of miR164-CUC2 regulatory module in specifying leaf and floral organ morphology in strawberry. The New phytologist 224 (1) (2019)
Rachel Shahan, Dongdong Li, Zhongchi Liu
Identification of genes preferentially expressed in wild strawberry receptacle fruit and demonstration of their promoter activities. Horticulture research 6 (2019)
Yongping Li, Mengting Pi, Qi Gao, Zhongchi Liu, Chunying Kang
Updated annotation of the wild strawberry Fragaria vesca V4 genome. Horticulture research 6 (2019)
Rui Xia, Chengjie Chen, Suresh Pokhrel, Wuqiang Ma, Kun Huang, Parth Patel, Fuxi Wang, Jing Xu, Zhongchi Liu, Jianguo Li, Blake C Meyers
24-nt reproductive phasiRNAs are broadly present in angiosperms. Nature communications 10 (1) (2019)
Kelsey D Galimba, Daniel G Bullock, Christopher Dardick, Zhongchi Liu, Ann M Callahan
Gibberellic acid induced parthenocarpic 'Honeycrisp' apples (Malus domestica) exhibit reduced ovary width and lower acidity. Horticulture research 6 (2019)
Dongdong Li, Wangshu Mou, Rui Xia, Li Li, Christopher Zawora, Tiejin Ying, Linchun Mao, Zhongchi Liu, Zisheng Luo
Integrated analysis of high-throughput sequencing data shows abscisic acid-responsive genes and miRNAs in strawberry receptacle fruit ripening. Horticulture research 6 (2019)
Yongping Li, Mengting Pi, Qi Gao, Zhongchi Liu, Chunying Kang
Erratum: Author Correction: Updated annotation of the wild strawberry Fragaria vesca V4 genome. Horticulture research 6 (2019)
Wanpeng Wang, Paja Sijacic, Pengbo Xu, Hongli Lian, Zhongchi Liu
Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proceedings of the National Academy of Sciences of the United States of America 115 (13) (2018)
Junhui Zhou, Guoming Wang, Zhongchi Liu
Efficient genome editing of wild strawberry genes, vector development and validation. Plant biotechnology journal 16 (11) (2018)
Rachel Shahan, Christopher Zawora, Haley Wight, John Sittmann, Wanpeng Wang, Stephen M Mount, Zhongchi Liu
Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry. Plant physiology 178 (1) (2018)
Dirk Joldersma, Zhongchi Liu
Plant genetics enters the nano age? Journal of integrative plant biology 60 (6) (2018)
Courtney A Hollender, Thierry Pascal, Amy Tabb, Toto Hadiarto, Chinnathambi Srinivasan, Wanpeng Wang, Zhongchi Liu, Ralph Scorza, Chris Dardick
Loss of a highly conserved sterile alpha motif domain gene (WEEP) results in pendulous branch growth in peach trees. Proceedings of the National Academy of Sciences of the United States of America 115 (20) (2018)
Matthew D Fischer, Emmanuel Mgboji, Zhongchi Liu
Pyrite cloning: a single tube and programmed reaction cloning with restriction enzymes. Plant methods 14 (2018)
Maria Fernanda Laranjeira-Silva, Wanpeng Wang, Tamika K Samuel, Fernando Y Maeda, Vladimir Michailowsky, Iqbal Hamza, Zhongchi Liu, Norma W Andrews
A MFS-like plasma membrane transporter required for Leishmania virulence protects the parasites from iron toxicity. PLoS pathogens 14 (6) (2018)
Xinlei Li, Jiyuan Li, Zhengqi Fan, Zhongchi Liu, Takayuki Tanaka, Hengfu Yin
Global gene expression defines faded whorl specification of double flower domestication in Camellia. Scientific reports 7 (1) (2017)
Charles Hawkins, Julie Caruana, Jiaming Li, Chris Zawora, Omar Darwish, Jun Wu, Nadim Alkharouf, Zhongchi Liu
An eFP browser for visualizing strawberry fruit and flower transcriptomes. Horticulture research 4 (2017)
Xue Gong, Miguel A Flores-Vergara, Jing Han Hong, Huangwei Chu, Jun Lim, Robert G Franks, Zhongchi Liu, Jian Xu
SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant physiology 170 (3) (2016)
Rui Xia, Songqing Ye, Zongrang Liu, Blake C Meyers, Zhongchi Liu
Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry. Plant physiology 169 (1) (2015)
Courtney A Hollender, Chunying Kang, Omar Darwish, Aviva Geretz, Benjamin F Matthews, Janet Slovin, Nadim Alkharouf, Zhongchi Liu
Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks. Plant physiology 165 (3) (2014)