Rui Xia

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 32

Top Venues

The Plant cell

The New phytologist

Science (New York, N.Y.)

Genome biology

South China Agricultural University

Virginia Polytechnic Institute and State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

South China Agricultural University Jun 01 2016

China

Principal Investigator :: College of Horticulture

Education History

Virginia Polytechnic Institute and State University Aug 10 2009 - Apr 13 2013

United States

PHD :: Horticulture

Publications

Fengqi Wu, Yingxiao Mai, Chengjie Chen, Rui Xia
SynGAP: a synteny-based toolkit for gene structure annotation polishing. Genome biology 25 (1) (2024)
Jiawei Li, Chengjie Chen, Zaohai Zeng, Fengqi Wu, Junting Feng, Bo Liu, Yingxiao Mai, Xinyi Chu, Wanchun Wei, Xin Li, Yanyang Liang, Yuanlong Liu, Jing Xu, Rui Xia
SapBase: A central portal for functional and comparative genomics of Sapindaceae species. Journal of integrative plant biology (2024)
Fengqi Wu, Yingxiao Mai, Chengjie Chen, Rui Xia
SynGAP: a synteny-based toolkit for gene structure annotation polishing. Genome biology 25 (1) (2024)
Jiawei Li, Chengjie Chen, Zaohai Zeng, Fengqi Wu, Junting Feng, Bo Liu, Yingxiao Mai, Xinyi Chu, Wanchun Wei, Xin Li, Yanyang Liang, Yuanlong Liu, Jing Xu, Rui Xia
SapBase: A central portal for functional and comparative genomics of Sapindaceae species. Journal of integrative plant biology 66 (8) (2024)
Fengqi Wu, Yingxiao Mai, Chengjie Chen, Rui Xia
SynGAP: a synteny-based toolkit for gene structure annotation polishing. Genome biology 25 (1) (2024)
Lijun Chai, Wenjie Chen, Amy M Lafountain, Yuanlong Liu, Foen Peng, Rui Xia, H D Bradshaw, Yao-Wu Yuan
Taxon-specific, phased siRNAs underlie a speciation locus in monkeyflowers. Science (New York, N.Y.) 379 (6632) (2023)
Lijun Chai, Wenjie Chen, Amy M Lafountain, Yuanlong Liu, Foen Peng, Rui Xia, H D Bradshaw, Yao-Wu Yuan
Taxon-specific, phased siRNAs underlie a speciation locus in monkeyflowers. Science (New York, N.Y.) 379 (6632) (2023)
Yanqing Zhang, Zaohai Zeng, Huimin Hu, Ming-Lei Zhao, Chengjie Chen, Xingshuai Ma, Guanliang Li, Jianguo Li, Yuanlong Liu, Yanwei Hao, Jing Xu, Rui Xia
MicroRNA482/2118 is lineage-specifically involved in gibberellin signalling via the regulation of GID1 expression by targeting noncoding PHAS genes and subsequently instigated phasiRNAs. Plant biotechnology journal (2023)
Lijun Chai, Wenjie Chen, Amy M Lafountain, Yuanlong Liu, Foen Peng, Rui Xia, H D Bradshaw, Yao-Wu Yuan
Taxon-specific, phased siRNAs underlie a speciation locus in monkeyflowers. Science (New York, N.Y.) 379 (6632) (2023)
Lijun Chai, Wenjie Chen, Amy M Lafountain, Yuanlong Liu, Foen Peng, Rui Xia, H D Bradshaw, Yao-Wu Yuan
Taxon-specific, phased siRNAs underlie a speciation locus in monkeyflowers. Science (New York, N.Y.) 379 (6632) (2023)
Guibing Hu, Junting Feng, Xu Xiang, Jiabao Wang, Jarkko Salojärvi, Chengming Liu, Zhenxian Wu, Ji-Sen Zhang, Xinming Liang, Zide Jiang, Wei Liu, Liangxi Ou, Jiawei Li, Guangyi Fan, Yingxiao Mai, Chengjie Chen, Xingtan Zhang, Jiakun Zheng, Yanqing Zhang, Hongxiang Peng, Lixian Yao, Ching Man Wai, Xinping Luo, Jiaxin Fu, Haibao Tang, Tianying Lan, Biao Lai, Jinhua Sun, Yongzan Wei, Huanling Li, Jiezhen Chen, Xuming Huang, Qian Yan, Xin Liu, Leah K McHale, William Rolling, Romain Guyot, David Sankoff, Chunfang Zheng, Victor A Albert, Ray Ming, Houbin Chen, Rui Xia, Jianguo Li
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars. Nature genetics 54 (1) (2022)
Chengjie Chen, Ya Wu, Rui Xia
A painless way to customize Circos plot: From data preparation to visualization using TBtools. iMeta 1 (3) (2022)
Chengjie Chen, Ya Wu, Rui Xia
A painless way to customize Circos plot: From data preparation to visualization using TBtools. iMeta 1 (3) (2022)
Jiakun Zheng, Chengjie Chen, Guanliang Li, Peike Chen, Yuanlong Liu, Rui Xia
Biogenesis of reproductive PhasiRNAs: exceptions to the rules. Plant biotechnology journal (2022)
Kai-Li Wang, Yuanyuan Zhang, Heng-Mu Zhang, Xin-Chun Lin, Rui Xia, Lili Song, Ai-Min Wu
MicroRNAs play important roles in regulating the rapid growth of the Phyllostachys edulis culm internode. The New phytologist 231 (6) (2021)
Yanqing Zhang, Muhammad Waseem, Zaohai Zeng, Jing Xu, Chengjie Chen, Yuanlong Liu, Jixian Zhai, Rui Xia
MicroRNA482/2118, a miRNA superfamily essential for both disease resistance and plant development. The New phytologist (2021)
Daoheng Hu, Yiming Yu, Chun Wang, Yan-Ping Long, Yue Liu, Feng Li, Dongdong Lu, Bo Liu, Jinbu Jia, Rui Xia, Jiamu Du, Xuehua Zhong, Lei Gong, Kejian Wang, Jixian Zhai
Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions. The Plant cell 33 (9) (2021)
Chengjie Chen, Jiawei Li, Junting Feng, Bo Liu, Lei Feng, Xiaoling Yu, Guanliang Li, Jixian Zhai, Blake C Meyers, Rui Xia
sRNAanno-a database repository of uniformly annotated small RNAs in plants. Horticulture research 8 (1) (2021)
Daoheng Hu, Yiming Yu, Chun Wang, Yan-Ping Long, Yue Liu, Feng Li, Dongdong Lu, Bo Liu, Jinbu Jia, Rui Xia, Jiamu Du, Xuehua Zhong, Lei Gong, Kejian Wang, Jixian Zhai
Erratum for: Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions. The Plant cell (2021)
Mei Liang, Zonghong Cao, Andan Zhu, Yuanlong Liu, Mengqin Tao, Huayan Yang, Qiang Xu, Shaohua Wang, Junjie Liu, Yongping Li, Chuanwu Chen, Zongzhou Xie, Chongling Deng, Junli Ye, Wenwu Guo, Qiang Xu, Rui Xia, Robert M Larkin, Xiu-Xin Deng, Maurice Bosch, Vernonica E Franklin-Tong, Lijun Chai
Evolution of self-compatibility by a mutant Sm-RNase in citrus. Nature plants 6 (2) (2020)
Jinbu Jia, Yan-Ping Long, Hong Zhang, Zhuowen Li, Zhijian Liu, Yan Zhao, Dongdong Lu, Xianhao Jin, Xian Deng, Rui Xia, Xiaofeng Cao, Jixian Zhai
Post-transcriptional splicing of nascent RNA contributes to widespread intron retention in plants. Nature plants 6 (7) (2020)
Baoqing Ding, Rui Xia, Qiaoshan Lin, Vandana Gurung, Janelle M Sagawa, Lauren E Stanley, Matthew Strobel, Pamela K Diggle, Blake C Meyers, Yao-Wu Yuan
Developmental Genetics of Corolla Tube Formation: Role of the tasiRNA-ARF Pathway and a Conceptual Model. The Plant cell 32 (11) (2020)
Peng Tian, Xuemei Zhang, Rui Xia, Yang Liu, Meijiao Wang, Bo Li, Tieyan Liu, Jinfeng Shi, Rod A Wing, Blake C Meyers, Mingsheng Chen
Evolution and diversification of reproductive phased small interfering RNAs in Oryza species. The New phytologist 229 (5) (2020)
Jinbu Jia, Ronghuan Ji, Zhuowen Li, Yiming Yu, Mayumi Nakano, Yan-Ping Long, Feng Li, Chao Qin, Dongdong Lu, Junpeng Zhan, Rui Xia, Blake C Meyers, Bin Liu, Jixian Zhai
Soybean DICER-LIKE2 Regulates Seed Coat Color via Production of Primary 22-Nucleotide Small Interfering RNAs from Long Inverted Repeats. The Plant cell 32 (12) (2020)
Yuanlong Liu, Chong Teng, Rui Xia, Blake C Meyers
PhasiRNAs in Plants: Their Biogenesis, Genic Sources, and Roles in Stress Responses, Development, and Reproduction. The Plant cell 32 (10) (2020)
Rui Xia, Chengjie Chen, Suresh Pokhrel, Wuqiang Ma, Kun Huang, Parth Patel, Fuxi Wang, Jing Xu, Zhongchi Liu, Jianguo Li, Blake C Meyers
24-nt reproductive phasiRNAs are broadly present in angiosperms. Nature communications 10 (1) (2019)
Dongdong Li, Wangshu Mou, Rui Xia, Li Li, Christopher Zawora, Tiejin Ying, Linchun Mao, Zhongchi Liu, Zisheng Luo
Integrated analysis of high-throughput sequencing data shows abscisic acid-responsive genes and miRNAs in strawberry receptacle fruit ripening. Horticulture research 6 (2019)
Hong Zhu, Chengjie Chen, Jun Zeng, Ze Yun, Yuanlong Liu, Hongxia Qu, Yue-Ming Jiang, Xue-Wu Duan, Rui Xia
MicroRNA528, a hub regulator modulating ROS homeostasis via targeting of a diverse set of genes encoding copper-containing proteins in monocots. The New phytologist 225 (1) (2019)
Chengjie Chen, Zaohai Zeng, Zongrang Liu, Rui Xia
Small RNAs, emerging regulators critical for the development of horticultural traits. Horticulture research 5 (2018)
Guanghui Guo, Xin-Ye Liu, Fenglong Sun, Jie Cao, Na Huo, Bala Wuda, Mingming Xin, Zhaorong Hu, Jinkun Du, Rui Xia, Vincenzo Rossi, Huiru Peng, Zhongfu Ni, Qixin Sun, Yingyin Yao
Wheat miR9678 Affects Seed Germination by Generating Phased siRNAs and Modulating Abscisic Acid/Gibberellin Signaling. The Plant cell 30 (4) (2018)
Rui Xia, Jing Xu, Blake C Meyers
The Emergence, Evolution, and Diversification of the miR390-TAS3-ARF Pathway in Land Plants. The Plant cell 29 (6) (2017)
Wuqiang Ma, Chengjie Chen, Yuanlong Liu, Ming Zeng, Blake C Meyers, Jianguo Li, Rui Xia
Coupling of microRNA-directed phased small interfering RNA generation from long noncoding genes with alternative splicing and alternative polyadenylation in small RNA-mediated gene silencing. The New phytologist 217 (4) (2017)
Rui Xia, Songqing Ye, Zongrang Liu, Blake C Meyers, Zhongchi Liu
Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry. Plant physiology 169 (1) (2015)
Siwaret Arikit, Rui Xia, Atul Kakrana, Kun Huang, Jixian Zhai, Zhe Yan, Oswaldo Valdés-López, Silvas Prince, Theresa A Musket, Henry T Nguyen, Gary Stacey, Blake C Meyers
An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. The Plant cell 26 (12) (2014)

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Publication Activity (10 Years)

Top Topics

Top Venues

Rui Xia