Ziding Zhang

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 31

Top Venues

mSystems

The ISME journal

Briefings in bioinformatics

Journal of proteome research

Tianjin University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Tianjin University Mar 01 1997 - Feb 29 2000

China

PHD :: School of Chemical Engineering

Tianjin University

China

MSC :: Chemical Engineering Res Ctr

Tianjin University Sep 01 1990 - Jun 30 1994

China

BSC :: Dept of Chemical Engineering

Publications

Xiaodi Yang, Jialin Zhu, Qingyun Wang, Bo Tang, Ye Shen, Bingjie Wang, Li Ji, Huihui Liu, Stefan Wuchty, Ziding Zhang, Yu-Jun Dong, Liang Ze-Yin
Comparative analysis of dynamic transcriptomes reveals specific COVID-19 features and pathogenesis of immunocompromised populations. mSystems 9 (6) (2024)
Xiaodi Yang, Jialin Zhu, Qingyun Wang, Bo Tang, Ye Shen, Bingjie Wang, Li Ji, Huihui Liu, Stefan Wuchty, Ziding Zhang, Yu-Jun Dong, Liang Ze-Yin
Comparative analysis of dynamic transcriptomes reveals specific COVID-19 features and pathogenesis of immunocompromised populations. mSystems 9 (6) (2024)
Xiaodi Yang, Jialin Zhu, Qingyun Wang, Bo Tang, Ye Shen, Bingjie Wang, Li Ji, Huihui Liu, Stefan Wuchty, Ziding Zhang, Yu-Jun Dong, Liang Ze-Yin
Comparative analysis of dynamic transcriptomes reveals specific COVID-19 features and pathogenesis of immunocompromised populations. mSystems 9 (6) (2024)
Xiaodi Yang, Jialin Zhu, Qingyun Wang, Bo Tang, Ye Shen, Bingjie Wang, Li Ji, Huihui Liu, Stefan Wuchty, Ziding Zhang, Yu-Jun Dong, Liang Ze-Yin
Comparative analysis of dynamic transcriptomes reveals specific COVID-19 features and pathogenesis of immunocompromised populations. mSystems (2024)
Xiaodi Yang, Stefan Wuchty, Zeyin Liang, Li Ji, Bingjie Wang, Jialin Zhu, Ziding Zhang, Yujun Dong
Multi-modal features-based human-herpesvirus protein-protein interaction prediction by using LightGBM. Briefings in bioinformatics 25 (2) (2024)
Xiaodi Yang, Jialin Zhu, Qingyun Wang, Bo Tang, Ye Shen, Bingjie Wang, Li Ji, Huihui Liu, Stefan Wuchty, Ziding Zhang, Yu-Jun Dong, Liang Ze-Yin
Comparative analysis of dynamic transcriptomes reveals specific COVID-19 features and pathogenesis of immunocompromised populations. mSystems 9 (6) (2024)
Yan Huang, Stefan Wuchty, Yuan Zhou, Ziding Zhang
SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network. Briefings in bioinformatics 24 (2) (2023)
Yuan-Yuan Ji, Biliang Zhang, Pan Zhang, Liu-Chi Chen, You-Wei Si, Xi-Yao Wan, Can Li, Ren-He Wang, Yu Tian, Ziding Zhang, Chang Fu Tian
Rhizobial migration toward roots mediated by FadL-ExoFQP modulation of extracellular long-chain AHLs. The ISME journal 17 (3) (2023)
Yuan-Yuan Ji, Biliang Zhang, Pan Zhang, Liu-Chi Chen, You-Wei Si, Xi-Yao Wan, Can Li, Ren-He Wang, Yu Tian, Ziding Zhang, Chang Fu Tian
Rhizobial migration toward roots mediated by FadL-ExoFQP modulation of extracellular long-chain AHLs. The ISME journal (2023)
Chenping Lei, Kewei Zhou, Jingyan Zheng, Miao Zhao, Yan Huang, Huaqin He, Shiping Yang, Ziding Zhang
AraPathogen2.0: An Improved Prediction of Plant-Pathogen Protein-Protein Interactions Empowered by the Natural Language Processing Technique. Journal of proteome research (2023)
Yan Huang, Stefan Wuchty, Yuan Zhou, Ziding Zhang
SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network. Briefings in bioinformatics (2023)
Yuan-Yuan Ji, Biliang Zhang, Pan Zhang, Liu-Chi Chen, You-Wei Si, Xi-Yao Wan, Can Li, Ren-He Wang, Yu Tian, Ziding Zhang, Chang Fu Tian
Rhizobial migration toward roots mediated by FadL-ExoFQP modulation of extracellular long-chain AHLs. The ISME journal 17 (3) (2023)
Yuan-Yuan Ji, Biliang Zhang, Pan Zhang, Liu-Chi Chen, You-Wei Si, Xi-Yao Wan, Can Li, Ren-He Wang, Yu Tian, Ziding Zhang, Chang Fu Tian
Rhizobial migration toward roots mediated by FadL-ExoFQP modulation of extracellular long-chain AHLs. The ISME journal (2023)
Yuan-Yuan Ji, Biliang Zhang, Pan Zhang, Liu-Chi Chen, You-Wei Si, Xi-Yao Wan, Can Li, Ren-He Wang, Yu Tian, Ziding Zhang, Chang Fu Tian
Rhizobial migration toward roots mediated by FadL-ExoFQP modulation of extracellular long-chain AHLs. The ISME journal (2023)
Miao Zhao, Chenping Lei, Kewei Zhou, Yan Huang, Chen Fu, Ziding Zhang
POOE: predicting oomycete effectors based on a pre-trained large protein language model. mSystems (2023)
Jingyan Zheng, Xiaodi Yang, Yan Huang, Shiping Yang, Stefan Wuchty, Ziding Zhang
Deep learning-assisted prediction of protein-protein interactions in Arabidopsis thaliana. The Plant journal : for cell and molecular biology (2023)
Tianpeng Wang, Yaqiong Guo, Dawn M Roellig, Na Li, Mónica Santín, Jason Lombard, Martin Kváč, Doaa Naguib, Ziding Zhang, Yaoyu Feng, Lihua Xiao
Sympatric Recombination in Zoonotic Cryptosporidium Leads to Emergence of Populations with Modified Host Preference. Molecular biology and evolution 39 (7) (2022)
Jian Jiao, Biliang Zhang, Meng-Lin Li, Ziding Zhang, Chang Fu Tian
The zinc-finger bearing xenogeneic silencer MucR in α-proteobacteria balances adaptation and regulatory integrity. The ISME journal (2021)
Wen-Jing Cui, Biliang Zhang, Ran Zhao, Li-Xue Liu, Jian Jiao, Ziding Zhang, Chang Fu Tian
Lineage-Specific Rewiring of Core Pathways Predating Innovation of Legume Nodules Shapes Symbiotic Efficiency. mSystems 6 (2) (2021)
Feng Zhu, Zhong-Tao Yin, Zheng Wang, Jacqueline Smith, Fan Zhang, Fergal J Martin, Denye Ogeh, Maxwell T Hincke, Fang-Bing Lin, David W Burt, Zheng-Kui Zhou, Shui-Sheng Hou, Qiang-Sen Zhao, Xiao-Qin Li, Si-Ran Ding, Guan-Sheng Li, Fang-Xi Yang, Jing-Pin Hao, Ziding Zhang, Li-Zhi Lu, Ning Yang, Zhuo-Cheng Hou
Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication. Nature communications 12 (1) (2021)
Xianyi Lian, Xiaodi Yang, Shiping Yang, Ziding Zhang
Current status and future perspectives of computational studies on human-virus protein-protein interactions. Briefings in bioinformatics 22 (5) (2021)
Chen Fu, Shiping Yang, Xiaodi Yang, Xianyi Lian, Yan Huang, Xiaobao Dong, Ziding Zhang
Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors. mSystems 5 (6) (2020)
Xiaodi Yang, Shiping Yang, Huan Qi, Tianpeng Wang, Hong Li, Ziding Zhang
PlaPPISite: a comprehensive resource for plant protein-protein interaction sites. BMC plant biology 20 (1) (2020)
Shiping Yang, Chen Fu, Xianyi Lian, Xiaobao Dong, Ziding Zhang
Understanding Human-Virus Protein-Protein Interactions Using a Human Protein Complex-Based Analysis Framework. mSystems 4 (2) (2019)
Xianyi Lian, Shiping Yang, Hong Li, Chen Fu, Ziding Zhang
Machine-Learning-Based Predictor of Human-Bacteria Protein-Protein Interactions by Incorporating Comprehensive Host-Network Properties. Journal of proteome research 18 (5) (2019)
Hong Li, Shuqin Jiang, Chen Li, Lei Liu, Zechuan Lin, Hang He, Xing-Wang Deng, Ziding Zhang, Xiangfeng Wang
The hybrid protein interactome contributes to rice heterosis as epistatic effects. The Plant journal : for cell and molecular biology 102 (1) (2019)
Qing Wang, Xu Wang, Weijia Zhang, Xianyu Li, Yuan Zhou, Dan Li, Yinjia Wang, Jiesheng Tian, Wei Jiang, Ziding Zhang, Youliang Peng, Lei Wang, Ying Li, Jilun Li
Physiological characteristics of Magnetospirillum gryphiswaldense MSR-1 that control cell growth under high-iron and low-oxygen conditions. Scientific reports 7 (1) (2017)
Zhe Lyu, Zhi-Gang Li, Fei He, Ziding Zhang
An Important Role for Purifying Selection in Archaeal Genome Evolution. mSystems 2 (5) (2017)
Zhenhong Jiang, Fei He, Ziding Zhang
Large-scale transcriptome analysis reveals arabidopsis metabolic pathways are frequently influenced by different pathogens. Plant molecular biology 94 (4-5) (2017)
Jiangning Song, Huilin Wang, Jiawei Wang, André Leier, Tatiana Marquez-Lago, Bingjiao Yang, Ziding Zhang, Tatsuya Akutsu, Geoffrey I Webb, Roger J Daly
PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection. Scientific reports 7 (1) (2017)
Xue-Ping Wang, Li-Mei Chen, Wen-Xin Liu, Li-Ke Shen, Feng-Liu Wang, Yuan Zhou, Ziding Zhang, Wei-Hua Wu, Yi Wang
AtKC1 and CIPK23 Synergistically Modulate AKT1-Mediated Low-Potassium Stress Responses in Arabidopsis. Plant physiology 170 (4) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ziding Zhang