Tatsuya Akutsu

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 27

Top Topics

Sentinel Lymph Node

Machine Learning

Top Venues

NPJ systems biology and applications

International journal of molecular sciences

BioMed research international

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Yusuke Tokuhara, Tatsuya Akutsu, Jean-Marc Schwartz, Jose C Nacher
A practically efficient algorithm for identifying critical control proteins in directed probabilistic biological networks. NPJ systems biology and applications 10 (1) (2024)
Tomohiro Umezu, Tomoya Mori, Hidenori Toyoda, Kohsuke Kanekura, Akihiro Tamori, Takahiro Ochiya, Masahiko Kuroda, Tatsuya Akutsu, Yoshiki Murakami
Analysis of Carcinogenic Involvement of MicroRNA Pattern in Peripheral Non-Cancerous Tissues and Chronic Viral Liver Injury. International journal of molecular sciences 25 (14) (2024)
Wataru Someya, Tatsuya Akutsu, Jean-Marc Schwartz, Jose C Nacher
Measuring criticality in control of complex biological networks. NPJ systems biology and applications 10 (1) (2024)
Wataru Someya, Tatsuya Akutsu, Jean-Marc Schwartz, Jose C Nacher
Measuring criticality in control of complex biological networks. NPJ systems biology and applications 10 (1) (2024)
Tomohiro Umezu, Tomoya Mori, Hidenori Toyoda, Kohsuke Kanekura, Akihiro Tamori, Takahiro Ochiya, Masahiko Kuroda, Tatsuya Akutsu, Yoshiki Murakami
Analysis of Carcinogenic Involvement of MicroRNA Pattern in Peripheral Non-Cancerous Tissues and Chronic Viral Liver Injury. International journal of molecular sciences 25 (14) (2024)
Tomohiro Umezu, Tomoya Mori, Hidenori Toyoda, Kohsuke Kanekura, Akihiro Tamori, Takahiro Ochiya, Masahiko Kuroda, Tatsuya Akutsu, Yoshiki Murakami
Analysis of Carcinogenic Involvement of MicroRNA Pattern in Peripheral Non-Cancerous Tissues and Chronic Viral Liver Injury. International journal of molecular sciences 25 (14) (2024)
Wataru Someya, Tatsuya Akutsu, Jean-Marc Schwartz, Jose C Nacher
Measuring criticality in control of complex biological networks. NPJ systems biology and applications 10 (1) (2024)
Yusuke Tokuhara, Tatsuya Akutsu, Jean-Marc Schwartz, Jose C Nacher
A practically efficient algorithm for identifying critical control proteins in directed probabilistic biological networks. NPJ systems biology and applications 10 (1) (2024)
Yusuke Tokuhara, Tatsuya Akutsu, Jean-Marc Schwartz, Jose C Nacher
A practically efficient algorithm for identifying critical control proteins in directed probabilistic biological networks. NPJ systems biology and applications 10 (1) (2024)
Koji Shiota, Tatsuya Akutsu
Multi-shelled ECIF: improved extended connectivity interaction features for accurate binding affinity prediction. Bioinformatics advances 3 (1) (2023)
Tong Pan, Chen Li, Yue Bi, Zhikang Wang, Robin B Gasser, Anthony W Purcell, Tatsuya Akutsu, Geoffrey I Webb, Seiya Imoto, Jiangning Song
PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships. Bioinformatics (Oxford, England) 39 (3) (2023)
Kouki Matsuda, Arata Shirakami, Ryota Nakajima, Tatsuya Akutsu, Masanori Shimono
Whole-Brain Evaluation of Cortical Microconnectomes. eNeuro 10 (10) (2023)
Tong Pan, Chen Li, Yue Bi, Zhikang Wang, Robin B Gasser, Anthony W Purcell, Tatsuya Akutsu, Geoffrey I Webb, Seiya Imoto, Jiangning Song
PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships. Bioinformatics (Oxford, England) 39 (3) (2023)
Tong Pan, Chen Li, Yue Bi, Zhikang Wang, Robin B Gasser, Anthony W Purcell, Tatsuya Akutsu, Geoffrey I Webb, Seiya Imoto, Jiangning Song
PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships. Bioinformatics (Oxford, England) 39 (3) (2023)
Chunting Liu, Jiangning Song, Hiroyuki Ogata, Tatsuya Akutsu
MSNet-4mC: learning effective multi-scale representations for identifying DNA N4-methylcytosine sites. Bioinformatics (Oxford, England) 38 (23) (2022)
Ulrike Münzner, Tomoya Mori, Marcus Krantz, Edda Klipp, Tatsuya Akutsu
Identification of periodic attractors in Boolean networks using a priori information. PLoS computational biology 18 (1) (2022)
Motoki Kajiwara, Ritsuki Nomura, Felix Goetze, Masanori Kawabata, Yoshikazu Isomura, Tatsuya Akutsu, Masanori Shimono
Inhibitory neurons exhibit high controlling ability in the cortical microconnectome. PLoS computational biology 17 (4) (2021)
Eimi Yamaguchi, Tatsuya Akutsu, Jose C Nacher
Probabilistic Critical Controllability Analysis of Protein Interaction Networks Integrating Normal Brain Ageing Gene Expression Profiles. International journal of molecular sciences 22 (18) (2021)
Naveed Ahmed Azam, Jianshen Zhu, Yanming Sun, Yu Shi, Aleksandar Shurbevski, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu
A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming. Algorithms for molecular biology : AMB 16 (1) (2021)
Pengyu Liu, Jiangning Song, Chun-Yu Lin, Tatsuya Akutsu
ReCGBM: a gradient boosting-based method for predicting human dicer cleavage sites. BMC bioinformatics 22 (1) (2021)
Ruiming Li, Chun-Yu Lin, Wei-Feng Guo, Tatsuya Akutsu
Weighted minimum feedback vertex sets and implementation in human cancer genes detection. BMC bioinformatics 22 (1) (2021)
Yu Shi, Jianshen Zhu, Naveed Ahmed Azam, Kazuya Haraguchi, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu
An Inverse QSAR Method Based on a Two-Layered Model and Integer Programming. International journal of molecular sciences 22 (6) (2021)
Vandana Ravindran, Jose C Nacher, Tatsuya Akutsu, Masayuki Ishitsuka, Adrian Osadcenco, V Sunitha, Ganesh Bagler, Jean-Marc Schwartz, David L Robertson
Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems. Scientific reports 9 (1) (2019)
Jean-Marc Schwartz, Hiroaki Otokuni, Tatsuya Akutsu, Jose C Nacher
Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues. Nature communications 10 (1) (2019)
Jose C Nacher, Masayuki Ishitsuka, Shuichi Miyazaki, Tatsuya Akutsu
Finding and analysing the minimum set of driver nodes required to control multilayer networks. Scientific reports 9 (1) (2019)
Jiangning Song, Huilin Wang, Jiawei Wang, André Leier, Tatiana Marquez-Lago, Bingjiao Yang, Ziding Zhang, Tatsuya Akutsu, Geoffrey I Webb, Roger J Daly
PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection. Scientific reports 7 (1) (2017)
Hao-Teng Chang, Tatsuya Akutsu, Oliver Ray, Sorin Draghici, Tun-Wen Pai
Intelligent Informatics in Translational Medicine 2016. BioMed research international 2017 (2017)
Hao-Teng Chang, Tatsuya Akutsu, Sorin Draghici, Oliver Ray, Tun-Wen Pai
Intelligent Informatics in Translational Medicine. BioMed research international 2015 (2015)
Mayumi Kamada, Yusuke Sakuma, Morihiro Hayashida, Tatsuya Akutsu
Prediction of protein-protein interaction strength using domain features with supervised regression. TheScientificWorldJournal 2014 (2014)
Julia Tzu-Ya Weng, Li-Ching Wu, Wen-Chi Chang, Tzu-Hao Chang, Tatsuya Akutsu, Tzong-Yi Lee
Novel bioinformatics approaches for analysis of high-throughput biological data. BioMed research international 2014 (2014)
Natsu Nakajima, Tatsuya Akutsu
Exact and heuristic methods for network completion for time-varying genetic networks. BioMed research international 2014 (2014)
Natsu Nakajima, Tatsuya Akutsu
Network completion for static gene expression data. Advances in bioinformatics 2014 (2014)