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Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome.

Ahmed A ZayedJames M WainainaGuillermo Dominguez-HuertaEric PelletierJiarong GuoMohamed MohssenFuning TianAkbar Adjie PratamaBenjamin BolducOlivier ZablockiDylan CroninLindsey SoldenErwan DelageAdriana AlbertiJean-Marc AuryQuentin CarradecCorinne Da SilvaKarine LabadieJulie PoulainHans-Joachim RuscheweyhGuillem SalazarElan Shatoffnull nullRalf BundschuhKurt FredrickLaura S KubatkoSamuel ChaffronAlexander I CulleyShinichi SunagawaJ Thomas BeattyPatrick WinckerMatthew B SullivanSilvia G AcinasMarcel BabinPeer BorkEmmanuel BossChris BowlerGuy CochraneColomban de VargasGabriel GorskyLionel GuidiNigel GrimsleyPascal HingampDaniele IudiconeOlivier JaillonStefanie KandelsLee Karp-BossEric KarsentiFabrice NotHiroyuki OgataNicole PoultonStéphane PesantChristian SardetSabrinia SpeichLars StemmannMatthew B SullivanShinichi SungawaPatrick Wincker
Published in: Science (New York, N.Y.) (2022)
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem players, RNA viruses are insufficiently studied outside disease settings. In this study, we analyzed ≈28 terabases of Global Ocean RNA sequences to expand Earth's RNA virus catalogs and their taxonomy, investigate their evolutionary origins, and assess their marine biogeography from pole to pole. Using new approaches to optimize discovery and classification, we identified RNA viruses that necessitate substantive revisions of taxonomy (doubling phyla and adding >50% new classes) and evolutionary understanding. "Species"-rank abundance determination revealed that viruses of the new phyla " Taraviricota ," a missing link in early RNA virus evolution, and " Arctiviricota " are widespread and dominant in the oceans. These efforts provide foundational knowledge critical to integrating RNA viruses into ecological and epidemiological models.
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