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Scaling Concepts in Serpin Polymer Physics.

Samuele RaccostaFabio LibrizziAlistair M JaggerRosina NotoVincenzo MartoranaDavid A LomasJames A IrvingMauro Manno
Published in: Materials (Basel, Switzerland) (2021)
α1-Antitrypsin is a protease inhibitor belonging to the serpin family. Serpin polymerisation is at the core of a class of genetic conformational diseases called serpinopathies. These polymers are known to be unbranched, flexible, and heterogeneous in size with a beads-on-a-string appearance viewed by negative stain electron microscopy. Here, we use atomic force microscopy and time-lapse dynamic light scattering to measure polymer size and shape for wild-type (M) and Glu342→Lys (Z) α1-antitrypsin, the most common variant that leads to severe pathological deficiency. Our data for small polymers deposited onto mica and in solution reveal a power law relation between the polymer size, namely the end-to-end distance or the hydrodynamic radius, and the polymer mass, proportional to the contour length. We use the scaling concepts of polymer physics to assess that α1-antitrypsin polymers are random linear chains with a low persistence length.
Keyphrases
  • atomic force microscopy
  • wild type
  • genome wide
  • electron microscopy
  • single molecule
  • molecular dynamics
  • dna methylation
  • gene expression
  • molecular dynamics simulations
  • early onset
  • machine learning
  • drug induced