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Solubilizer Tag Effect on PD-L1/Inhibitor Binding Properties for m -Terphenyl Derivatives.

Ewa SurmiakJulia ZąberJacek PlewkaGrzegorz WojtanowiczJustyna Kocik-KrolOskar KrucDamian MuszakIsmael RodriguezBogdan M MusielakMonica VivianoSabrina CastellanoŁukasz SkalniakKatarzyna Magiera-MularzTad A HolakJustyna Kalinowska-Tłuścik
Published in: ACS medicinal chemistry letters (2023)
Although heavily studied, the subject of anti-PD-L1 small-molecule inhibitors is still elusive. Here we present a systematic overview of the principles behind successful anti-PD-L1 small-molecule inhibitor design on the example of the m -terphenyl scaffold, with a particular focus on the neglected influence of the solubilizer tag on the overall affinity toward PD-L1. The inhibitor developed according to the proposed guidelines was characterized through its potency in blocking PD-1/PD-L1 complex formation in homogeneous time-resolved fluorescence and cell-based assays. The affinity is also explained based on the crystal structure of the inhibitor itself and its costructure with PD-L1 as well as a molecular modeling study. Our results structuralize the knowledge related to the strong pharmacophore feature of the m -terphenyl scaffold preferential geometry and the more complex role of the solubilizer tag in PD-L1 homodimer stabilization.
Keyphrases
  • small molecule
  • healthcare
  • protein protein
  • single cell
  • deep learning
  • molecular dynamics
  • molecular docking
  • cell therapy
  • bone marrow
  • tissue engineering
  • molecular dynamics simulations