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Bioinformatics-Guided Discovery of Biaryl-Tailored Lasso Peptides.

Hamada SaadThomas MajerKeshab BhattaraiSarah LampeDinh T NguyenMarkus KramerJan StraetenerHeike Br Tz-OesterheltDouglas A MitchellHarald Gross
Published in: bioRxiv : the preprint server for biology (2023)
Lasso peptides are a class of ribosomally synthesized and post-translationally modified peptides (RiPPs) that feature an isopeptide bond and a distinct lariat fold. A growing number of secondary modifications have been described that further decorate lasso peptide scaffolds. Using genome mining, we have discovered a pair of lasso peptide biosynthetic gene clusters (BGCs) that include cytochrome P450 genes. Here, we report the structural characterization of two unique examples of (C-N) biaryl-containing lasso peptides. Nocapeptin A, from Nocardia terpenica, is tailored with Trp-Tyr crosslink while longipepetin A, from Longimycelium tulufanense, features Trp-Trp linkage. Besides the unusual bicyclic frame, longipepetin A receives an S-methylation by a new Met methyltransferase resulting in unprecedented sulfonium-bearing RiPP. Our bioinformatic survey revealed P450(s) and further maturating enzyme(s)-containing lasso BGCs awaiting future characterization.
Keyphrases
  • genome wide
  • amino acid
  • dna methylation
  • machine learning
  • small molecule
  • copy number
  • single cell
  • cross sectional
  • deep learning
  • hepatitis c virus
  • current status
  • hiv infected
  • antiretroviral therapy