Molecular features driving cellular complexity of human brain evolution.
Emre CaglayanFatma AyhanYuxiang LiuRachael M VollmerEmily OhChet C SherwoodTodd M PreussSoojin V YiGenevieve KonopkaPublished in: Nature (2023)
Human-specific genomic changes contribute to the unique functionalities of the human brain 1-5 . The cellular heterogeneity of the human brain 6,7 and the complex regulation of gene expression highlight the need to characterize human-specific molecular features at cellular resolution. Here we analysed single-nucleus RNA-sequencing and single-nucleus assay for transposase-accessible chromatin with sequencing datasets for human, chimpanzee and rhesus macaque brain tissue from posterior cingulate cortex. We show a human-specific increase of oligodendrocyte progenitor cells and a decrease of mature oligodendrocytes across cortical tissues. Human-specific regulatory changes were accelerated in oligodendrocyte progenitor cells, and we highlight key biological pathways that may be associated with the proportional changes. We also identify human-specific regulatory changes in neuronal subtypes, which reveal human-specific upregulation of FOXP2 in only two of the neuronal subtypes. We additionally identify hundreds of new human accelerated genomic regions associated with human-specific chromatin accessibility changes. Our data also reveal that FOS::JUN and FOX motifs are enriched in the human-specifically accessible chromatin regions of excitatory neuronal subtypes. Together, our results reveal several new mechanisms underlying the evolutionary innovation of human brain at cell-type resolution.
Keyphrases
- endothelial cells
- gene expression
- induced pluripotent stem cells
- pluripotent stem cells
- genome wide
- single cell
- transcription factor
- multiple sclerosis
- immune response
- white matter
- poor prognosis
- machine learning
- high throughput
- brain injury
- functional connectivity
- artificial intelligence
- rna seq
- blood brain barrier