Pangenome graph layout by Path-Guided Stochastic Gradient Descent.

Simon Heumos Andrea Guarracino Jan-Niklas Manuel Schmelzle Jiajie Li Zhiru Zhang Jörg Hagmann Sven Nahnsen Pjotr Prins Erik P Garrison

Published in: Bioinformatics (Oxford, England) (2024)

We integrated PG-SGD in ODGI which is released as free software under the MIT open source license. Source code is available at https://github.com/pangenome/odgi.

Keyphrases

convolutional neural network
neural network