Sven Nahnsen

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 16

Top Topics

Convolutional Neural Network

Inflammatory Response

Top Venues

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

NAR genomics and bioinformatics

Neuro-oncology advances

This page only lists publications with an associated author ORCID identifier.

Publications

Friederike Hanssen, Maxime Ulysse Garcia, Lasse Folkersen, Anders Sune Pedersen, Francesco Lescai, Susanne Jodoin, Edmund Miller, Matthias Seybold, Oskar Wacker, Nicholas Smith, Gisela Gabernet, Sven Nahnsen
Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery. NAR genomics and bioinformatics 6 (2) (2024)
Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Yann Lee, Cole Jensen, David Ladd, Friederike Hanssen, Simon Heumos, null null, Gur Yaari, Markus C Kowarik, Sven Nahnsen, Steven H Kleinstein
nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. bioRxiv : the preprint server for biology (2024)
Friederike Hanssen, Maxime Ulysse Garcia, Lasse Folkersen, Anders Sune Pedersen, Francesco Lescai, Susanne Jodoin, Edmund Miller, Matthias Seybold, Oskar Wacker, Nicholas Smith, Gisela Gabernet, Sven Nahnsen
Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery. NAR genomics and bioinformatics 6 (2) (2024)
Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Yann Lee, Cole Jensen, David Ladd, Friederike Hanssen, Simon Heumos, null null, Gur Yaari, Markus C Kowarik, Sven Nahnsen, Steven H Kleinstein
nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. bioRxiv : the preprint server for biology (2024)
Simon Heumos, Andrea Guarracino, Jan-Niklas Manuel Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik P Garrison
Pangenome graph layout by Path-Guided Stochastic Gradient Descent. Bioinformatics (Oxford, England) 40 (7) (2024)
Simon Heumos, Andrea Guarracino, Jan-Niklas Manuel Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik P Garrison
Pangenome graph layout by Path-Guided Stochastic Gradient Descent. Bioinformatics (Oxford, England) 40 (7) (2024)
Simon Heumos, Andrea Guarracino, Jan-Niklas Manuel Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik P Garrison
Pangenome graph layout by Path-Guided Stochastic Gradient Descent. Bioinformatics (Oxford, England) 40 (7) (2024)
Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Yann Lee, Cole Jensen, David Ladd, Friederike Hanssen, Simon Heumos, null null, Gur Yaari, Markus C Kowarik, Sven Nahnsen, Steven H Kleinstein
nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. bioRxiv : the preprint server for biology (2024)
Mirjam Renovanz, Sylvia C Kurz, Johannes Rieger, Bianca Walter, Hannes Becker, Hanni Hille, Paula Bombach, David Rieger, Lucia Grosse, Lara Häusser, Marco Skardelly, Daniel J Merk, Frank Paulsen, Elgin Hoffmann, Cihan Gani, Manuela Neumann, Rudi Beschorner, Olaf Rieß, Cristiana Roggia, Christopher Schroeder, Stephan Ossowski, Sorin Armeanu-Ebinger, Axel Gschwind, Saskia Biskup, Martin Schulze, Falko Fend, Stephan Singer, Lars Zender, Claudia Lengerke, Sara Yvonne Brucker, Tobias Engler, Andrea Forschner, Arnulf Stenzl, Oliver Kohlbacher, Sven Nahnsen, Gisela Gabernet, Sven Fillinger, Benjamin Bender, Ulrike Ernemann, Öznur Öner, Janina Beha, Holly Sundberg Malek, Yvonne Möller, Kristina Ruhm, Marcos Tatagiba, Cornelia Brendle, Michael Bitzer, Nisar Malek, Daniel Zips, Ghazaleh Tabatabai
Clinical outcome of biomarker-guided therapies in adult patients with tumors of the nervous system. Neuro-oncology advances 5 (1) (2023)
Mirjam Renovanz, Sylvia C Kurz, Johannes Rieger, Bianca Walter, Hannes Becker, Hanni Hille, Paula Bombach, David Rieger, Lucia Grosse, Lara Häusser, Marco Skardelly, Daniel J Merk, Frank Paulsen, Elgin Hoffmann, Cihan Gani, Manuela Neumann, Rudi Beschorner, Olaf Rieß, Cristiana Roggia, Christopher Schroeder, Stephan Ossowski, Sorin Armeanu-Ebinger, Axel Gschwind, Saskia Biskup, Martin Schulze, Falko Fend, Stephan Singer, Lars Zender, Claudia Lengerke, Sara Yvonne Brucker, Tobias Engler, Andrea Forschner, Arnulf Stenzl, Oliver Kohlbacher, Sven Nahnsen, Gisela Gabernet, Sven Fillinger, Benjamin Bender, Ulrike Ernemann, Öznur Öner, Janina Beha, Holly Sundberg Malek, Yvonne Möller, Kristina Ruhm, Marcos Tatagiba, Cornelia Brendle, Michael Bitzer, Nisar Malek, Daniel Zips, Ghazaleh Tabatabai
Clinical outcome of biomarker-guided therapies in adult patients with tumors of the nervous system. Neuro-oncology advances 5 (1) (2023)
Erik P Garrison, Andrea Guarracino, Simon Heumos, Flavia Villani, Zhigui Bao, Lorenzo Tattini, Jörg Hagmann, Sebastian Vorbrugg, Santiago Marco-Sola, Christian Kubica, David George Ashbrook, Kaisa Thorell, Rachel L Rusholme-Pilcher, Gianni Liti, Emilio Rudbeck, Sven Nahnsen, Zuyu Yang, Mwaniki N Moses, Franklin L Nobrega, Yi Wu, Hao Chen, Joep de Ligt, Peter H Sudmant, Nicole Soranzo, Vincenza Colonna, Robert W Williams, Pjotr Prins
Building pangenome graphs. bioRxiv : the preprint server for biology (2023)
Simon Heumos, Andrea Guarracino, Jan-Niklas Manuel Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik P Garrison
Pangenome graph layout by Path-Guided Stochastic Gradient Descent. bioRxiv : the preprint server for biology (2023)
Andrea Guarracino, Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik P Garrison
ODGI: understanding pangenome graphs. Bioinformatics (Oxford, England) 38 (13) (2022)
Sabrina Krakau, Daniel Straub, Hadrien Gourlé, Gisela Gabernet, Sven Nahnsen
nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning. NAR genomics and bioinformatics 4 (1) (2022)
Luis Kuhn Cuellar, Andreas Friedrich, Gisela Gabernet, Luis de la Garza, Sven Fillinger, Adrian Seyboldt, Tobias Koch, Sven Zur Oven-Krockhaus, Friederike Wanke, Sandra Richter, Wolfgang M Thaiss, Marius Horger, Nisar Malek, Klaus Harter, Michael Bitzer, Sven Nahnsen
A data management infrastructure for the integration of imaging and omics data in life sciences. BMC bioinformatics 23 (1) (2022)
Philip A Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso, Sven Nahnsen
The nf-core framework for community-curated bioinformatics pipelines. Nature biotechnology 38 (3) (2020)