Mathematical modeling to reveal breakthrough mechanisms in the HIV Antibody Mediated Prevention (AMP) trials.
Daniel B ReevesYunda HuangElizabeth R DukeBryan T MayerErwing Fabian Cardozo OjedaFlorencia A BoshierDavid A SwanMorgane RollandMerlin L RobbJohn R MascolaMyron S CohenLawrence CoreyPeter B GilbertJoshua T SchifferPublished in: PLoS computational biology (2020)
The ongoing Antibody Mediated Prevention (AMP) trials will uncover whether passive infusion of the broadly neutralizing antibody (bNAb) VRC01 can protect against HIV acquisition. Previous statistical simulations indicate these trials may be partially protective. In that case, it will be crucial to identify the mechanism of breakthrough infections. To that end, we developed a mathematical modeling framework to simulate the AMP trials and infer the breakthrough mechanisms using measurable trial outcomes. This framework combines viral dynamics with antibody pharmacokinetics and pharmacodynamics, and will be generally applicable to forthcoming bNAb prevention trials. We fit our model to human viral load data (RV217). Then, we incorporated VRC01 neutralization using serum pharmacokinetics (HVTN 104) and in vitro pharmacodynamics (LANL CATNAP database). We systematically explored trial outcomes by reducing in vivo potency and varying the distribution of sensitivity to VRC01 in circulating strains. We found trial outcomes could be used in a clinical trial regression model (CTRM) to reveal whether partially protective trials were caused by large fractions of VRC01-resistant (IC50>50 μg/mL) circulating strains or rather a global reduction in VRC01 potency against all strains. The former mechanism suggests the need to enhance neutralizing antibody breadth; the latter suggests the need to enhance VRC01 delivery and/or in vivo binding. We will apply the clinical trial regression model to data from the completed trials to help optimize future approaches for passive delivery of anti-HIV neutralizing antibodies.
Keyphrases
- clinical trial
- antiretroviral therapy
- phase ii
- phase iii
- study protocol
- hiv infected
- hiv positive
- escherichia coli
- human immunodeficiency virus
- hepatitis c virus
- hiv aids
- mycobacterium tuberculosis
- randomized controlled trial
- electronic health record
- dengue virus
- endothelial cells
- protein kinase
- type diabetes
- open label
- genome wide
- dna methylation
- gene expression
- big data
- sars cov
- zika virus
- machine learning
- molecular dynamics
- single cell
- adipose tissue
- men who have sex with men
- binding protein
- insulin resistance
- artificial intelligence
- pluripotent stem cells