A Radiomics and Genomics Derived Model for Predicting Metastasis and Prognosis in Colorectal Cancer.
Xue LiMeng WuMin WuJie LiuLi SongJiasi WangJun ZhouShilin LiHang YangJun ZhangXinwu CuiZhenyu LiuFanxin ZengPublished in: Carcinogenesis (2024)
Approximately 50% of colorectal cancer (CRC) patients would develop metastasis with poor prognosis, therefore, it is necessary to effectively predict metastasis in clinical treatment. In this study, we aimed to establish a machine learning model for predicting metastasis in CRC patients by considering radiomics and transcriptomics simultaneously. Here, 1,023 patients with CRC from three centers were collected and divided into 5 queues (Dazhou Central Hospital n = 517, Nanchong Central Hospital n = 120, the Cancer Genome Atlas (TCGA) n = 386). A total of 854 radiomics features were extracted from tumor lesions on CT images, and 217 differentially expressed genes were obtained from non-metastasis and metastasis tumor tissues using RNA sequencing. Based on radiotranscriptomic (RT) analysis, a novel RT model was developed and verified through genetic algorithms (GA). Interleukin (IL)-26, a biomarker in RT model, was verified for its biological function in CRC metastasis. Furthermore, 15 radiomics variables were screened through stepwise regression, which was highly correlated with the IL26 expression level. Finally, a radiomics model (RA) was established by combining GA and stepwise regression analysis with radiomics features. The RA model exhibited favorable discriminatory ability and accuracy for metastasis prediction in two independent verification cohorts. We designed multicenter, multi-scale cohorts to construct and verify novel combined radiomics and genomics models for predicting metastasis in CRC. Overall, RT model and RA model might help clinicians in directing personalized diagnosis and therapeutic regimen selection for patients with CRC.
Keyphrases
- poor prognosis
- machine learning
- lymph node metastasis
- contrast enhanced
- end stage renal disease
- healthcare
- genome wide
- gene expression
- deep learning
- computed tomography
- ejection fraction
- squamous cell carcinoma
- long non coding rna
- magnetic resonance imaging
- newly diagnosed
- pet ct
- magnetic resonance
- clinical trial
- palliative care
- papillary thyroid
- patient reported outcomes
- transcription factor
- cross sectional
- image quality
- convolutional neural network
- copy number
- electronic health record
- replacement therapy
- bioinformatics analysis
- positron emission tomography