Combined Transcriptomic and Metabolomic Approach Revealed a Relationship between Light Control, Photoprotective Pigments, and Lipid Biosynthesis in Olives.
Tiziana Maria SirangeloIvano ForgioneSamanta ZelascoCinzia BenincasaEnzo PerriElisa VendraminFederica AngilèFrancesco Paolo FanizziFrancesco SunseriAmelia SalimontiFabrizio CarbonePublished in: International journal of molecular sciences (2023)
Olive possesses excellent nutritional and economic values for its main healthy products. Among them, a high content of antioxidant compounds, balanced during the ripening process, are produced under genetic and environmental control, resulting in high variability among cultivars. The genes involved in these complex pathways are mainly known, but despite many studies which indicated the key role of light quality and quantity for the synthesis of many metabolites in plants, limited information on these topics is available in olive. We carried out a targeted gene expression profiling in three olive cultivars, Cellina di Nardò, Ruveia, and Salella, which were selected for their contrasting oleic acid and phenolic content. The - omics combined approach revealed a direct correlation between a higher expression of the main flavonoid genes and the high content of these metabolites in 'Cellina di Nardò'. Furthermore, it confirmed the key role of FAD2-2 in the linoleic acid biosynthesis. More interestingly, in all the comparisons, a co-regulation of genes involved in photoperception and circadian clock machinery suggests a key role of light in orchestrating the regulation of these pathways in olive. Therefore, the identified genes in our analyses might represent a useful tool to support olive breeding, although further investigations are needed.
Keyphrases
- genome wide
- single cell
- genome wide identification
- ms ms
- copy number
- poor prognosis
- oxidative stress
- healthcare
- escherichia coli
- biofilm formation
- transcription factor
- fatty acid
- staphylococcus aureus
- cancer therapy
- cell wall
- bioinformatics analysis
- gene expression
- social media
- genome wide analysis
- pseudomonas aeruginosa
- anti inflammatory
- human health