Automatic radiotherapy delineation quality assurance on prostate MRI with deep learning in a multicentre clinical trial.
Hang MinJason A DowlingMichael G JamesonKirrily CloakJoselle FaustinoMark SidhomJarad MartinMartin Andrew EbertAnnette HaworthPhillip ChlapJeremiah de LeonMegan BerryDavid I PryorPeter GreerShalini Kavita VinodLois C HollowayPublished in: Physics in medicine and biology (2021)
Volume delineation quality assurance (QA) is particularly important in clinical trial settings where consistent protocol implementation is required, as outcomes will affect future as well current patients. Currently, where feasible, this is conducted manually, which is time consuming and resource intensive. Although previous studies mostly focused on automating delineation QA on CT, magnetic resonance imaging (MRI) is being increasingly used in radiotherapy treatment. In this work, we propose to perform automatic delineation QA on prostate MRI for both the clinical target volume (CTV) and organs-at-risk (OARs) by using delineations generated by 3D Unet variants as benchmarks for QA. These networks were trained on a small gold standard atlas set and applied on a multicentre radiotherapy clinical trial dataset to generate benchmark delineations. Then, a QA stage was designed to recommend 'pass', 'minor correction' and 'major correction' for each manual delineation in the trial set by thresholding its Dice similarity coefficient to the network generated delineation. Among all 3D Unet variants explored, the Unet with anatomical gates in an AtlasNet architecture performed the best in delineation QA, achieving an area under the receiver operating characteristics curve of 0.97, 0.92, 0.89 and 0.97 for identifying unacceptable (major correction) delineations with a sensitivity of 0.93, 0.73, 0.74 and 0.90 at a specificity of 0.93, 0.86, 0.86 and 0.95 for bladder, prostate CTV, rectum and gel spacer respectively. To the best of our knowledge, this is the first study to propose automated delineation QA for a multicentre radiotherapy clinical trial with treatment planning MRI. The methods proposed in this work can potentially improve the accuracy and consistency of CTV and OAR delineation in radiotherapy treatment planning.
Keyphrases
- clinical trial
- magnetic resonance imaging
- contrast enhanced
- deep learning
- study protocol
- early stage
- double blind
- phase ii
- prostate cancer
- locally advanced
- diffusion weighted imaging
- radiation therapy
- phase iii
- radiation induced
- randomized controlled trial
- open label
- machine learning
- healthcare
- primary care
- end stage renal disease
- squamous cell carcinoma
- newly diagnosed
- copy number
- magnetic resonance
- spinal cord injury
- ejection fraction
- rectal cancer
- gene expression
- chronic kidney disease
- cross sectional
- current status
- smoking cessation
- single cell
- genome wide
- weight loss
- body composition