Energetic landscape of polycystin channel gating.
Leo C T NgBrandon J HarrisMegan LarmoreMy C TaThuy N VienValerie L TokarsVladimir Yarov-YarovoyPaul G DeCaenPublished in: EMBO reports (2023)
Members of the polycystin family (PKD2 and PKD2L1) of transient receptor potential (TRP) channels conduct Ca 2+ and depolarizing monovalent cations. Variants in PKD2 cause autosomal dominant polycystic kidney disease (ADPKD) in humans, whereas loss of PKD2L1 expression causes seizure susceptibility in mice. Understanding structural and functional regulation of these channels will provide the basis for interpreting their molecular dysregulation in disease states. However, the complete structures of polycystins are unresolved, as are the conformational changes regulating their conductive states. To provide a holistic understanding of the polycystin gating cycle, we use computational prediction tools to model missing PKD2L1 structural motifs and evaluate more than 150 mutations in an unbiased mutagenic functional screen of the entire pore module. Our results provide an energetic landscape of the polycystin pore, which enumerates gating sensitive sites and interactions required for opening, inactivation, and subsequent desensitization. These findings identify the external pore helices and specific cross-domain interactions as critical structural regulators controlling the polycystin ion channel conductive and nonconductive states.
Keyphrases
- polycystic kidney disease
- poor prognosis
- single molecule
- single cell
- high resolution
- type diabetes
- transcription factor
- copy number
- long non coding rna
- reduced graphene oxide
- molecular dynamics simulations
- high fat diet induced
- dna methylation
- metabolic syndrome
- insulin resistance
- mass spectrometry
- adipose tissue
- subarachnoid hemorrhage