Vladimir Yarov-Yarovoy

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 58

Top Venues

eLife

Proceedings of the National Academy of Sciences of the United States of America

The Journal of general physiology

bioRxiv : the preprint server for biology

University of California

Oregon Health and Science University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Jul 01 2020

United States

Professor :: Physiology and Membrtane Biology

University of California Davis Jul 01 2015 - Jun 30 2020

United States

Associate Professor :: Physiology and Membrane Biology

University of California Davis Jan 01 2011 - Jun 30 2015

United States

Assistant Professor :: Physiology and Membrane Biology

University of Washington Jul 01 2006 - Dec 31 2010

United States

Research Assistant Professor :: Pharmacology

University of Washington Jul 01 2004 - Jun 30 2006

United States

Acting Assistant Professor :: Pharmacology

University of Washington Jul 01 2003 - Jun 30 2004

United States

Acting Instructor :: Pharmacology

Education History

Oregon Health and Science University Sep 20 1993 - Sep 20 1998

United States

PHD

Moscow State University Sep 01 1985 - Jan 01 1993

Russia

MSC :: Physics

Publications

Heather C Spooner, Alexandre D Costa, Adriana Hernández González, Husna Ibrahimkhail, Vladimir Yarov-Yarovoy, Mary C Horne, Eamonn James Dickson, Rose E Dixon
14-3-3 promotes sarcolemmal expression of cardiac Ca V 1.2 and nucleates isoproterenol-triggered channel super-clustering. bioRxiv : the preprint server for biology (2024)
Khoa Ngo, Vladimir Yarov-Yarovoy, Colleen E Clancy, Igor Vorobyov
Harnessing AlphaFold to reveal state secrets: Prediction of hERG closed and inactivated states. bioRxiv : the preprint server for biology (2024)
Daniela Quiroz, Satoyo Oya, Diego Lopez Mateos, Kehan Zhao, Alice Pierce, Lissandro Ortega, Alissza Ali, Pablo Carbonell-Bejerano, Vladimir Yarov-Yarovoy, Sae Suzuki, Gosuke Hayashi, Akihisa Osakabe, J Grey Monroe
H3K4me1 recruits DNA repair proteins in plants. The Plant cell 36 (6) (2024)
Phuong Tran Nguyen, Brandon John Harris, Diego Lopez Mateos, Adriana Hernández González, Adam Michael Murray, Vladimir Yarov-Yarovoy
Structural modeling of ion channels using AlphaFold2, RoseTTAFold2, and ESMFold. Channels (Austin, Tex.) 18 (1) (2024)
Daniela Quiroz, Satoyo Oya, Diego Lopez Mateos, Kehan Zhao, Alice Pierce, Lissandro Ortega, Alissza Ali, Pablo Carbonell-Bejerano, Vladimir Yarov-Yarovoy, Sae Suzuki, Gosuke Hayashi, Akihisa Osakabe, J Grey Monroe
H3K4me1 recruits DNA repair proteins in plants. The Plant cell 36 (6) (2024)
Phuong Tran Nguyen, Brandon John Harris, Diego Lopez Mateos, Adriana Hernández González, Adam Michael Murray, Vladimir Yarov-Yarovoy
Structural modeling of ion channels using AlphaFold2, RoseTTAFold2, and ESMFold. Channels (Austin, Tex.) 18 (1) (2024)
Daniela Quiroz, Satoyo Oya, Diego Lopez Mateos, Kehan Zhao, Alice Pierce, Lissandro Ortega, Alissza Ali, Pablo Carbonell-Bejerano, Vladimir Yarov-Yarovoy, Sae Suzuki, Gosuke Hayashi, Akihisa Osakabe, J Grey Monroe
H3K4me1 recruits DNA repair proteins in plants. The Plant cell 36 (6) (2024)
Guangfeng Zhou, Domnita-Valeria Rusnac, Hahnbeom Park, Daniele Canzani, Hai Minh Nguyen, Lance J Stewart, Matthew F Bush, Phuong Tran Nguyen, Heike Wulff, Vladimir Yarov-Yarovoy, Ning Zheng, Frank Dimaio
An artificial intelligence accelerated virtual screening platform for drug discovery. Nature communications 15 (1) (2024)
Johannes W Hell, Stefan Herlitze, Lori L Isom, Amy Lee, Vladimir Yarov-Yarovoy
William Albert Catterall (1946-2024). Nature neuroscience 27 (6) (2024)
Johannes W Hell, Stefan Herlitze, Lori L Isom, Amy Lee, Vladimir Yarov-Yarovoy
William Albert Catterall (1946-2024). Nature neuroscience 27 (6) (2024)
Daniela Quiroz, Satoyo Oya, Diego Lopez Mateos, Kehan Zhao, Alice Pierce, Lissandro Ortega, Alissza Ali, Pablo Carbonell-Bejerano, Vladimir Yarov-Yarovoy, Sae Suzuki, Gosuke Hayashi, Akihisa Osakabe, J Grey Monroe
H3K4me1 recruits DNA repair proteins in plants. The Plant cell 36 (6) (2024)
Ryan L Woltz, Yang Zheng, Woori Choi, Khoa Ngo, Pauline Trinh, Lu Ren, Phung N Thai, Brandon J Harris, Yanxiao Han, Kyle C Rouen, Diego Lopez Mateos, Zhong Jian, Ye Chen-Izu, Eamonn James Dickson, Ebenezer N Yamoah, Vladimir Yarov-Yarovoy, Igor Vorobyov, Xiao-Dong Zhang, Nipavan Chiamvimonvat
Atomistic mechanisms of the regulation of small-conductance Ca 2+ -activated K + channel (SK2) by PIP2. Proceedings of the National Academy of Sciences of the United States of America 121 (39) (2024)
Johannes W Hell, Stefan Herlitze, Lori L Isom, Amy Lee, Vladimir Yarov-Yarovoy
William Albert Catterall (1946-2024). Nature neuroscience (2024)
Phuong Tran Nguyen, Brandon John Harris, Diego Lopez Mateos, Adriana Hernández González, Adam Michael Murray, Vladimir Yarov-Yarovoy
Structural modeling of ion channels using AlphaFold2, RoseTTAFold2, and ESMFold. Channels (Austin, Tex.) 18 (1) (2024)
Phuong Tran Nguyen, Brandon John Harris, Diego Lopez Mateos, Adriana Hernández González, Adam Michael Murray, Vladimir Yarov-Yarovoy
Structural modeling of ion channels using AlphaFold2, RoseTTAFold2, and ESMFold. Channels (Austin, Tex.) 18 (1) (2024)
Daniela Quiroz, Satoyo Oya, Diego Lopez Mateos, Kehan Zhao, Alice Pierce, Lissandro Ortega, Alissza Ali, Pablo Carbonell-Bejerano, Vladimir Yarov-Yarovoy, Sae Suzuki, Gosuke Hayashi, Akihisa Osakabe, J Grey Monroe
H3K4me1 recruits DNA repair proteins in plants. The Plant cell (2024)
Phuong Tran Nguyen, Brandon John Harris, Diego Lopez Mateos, Adriana Hernández González, Adam Michael Murray, Vladimir Yarov-Yarovoy
Structural modeling of ion channels using AlphaFold2, RoseTTAFold2, and ESMFold. Channels (Austin, Tex.) 18 (1) (2024)
Khoa Ngo, Vladimir Yarov-Yarovoy, Colleen E Clancy, Igor Vorobyov
Harnessing AlphaFold to reveal state secrets: Prediction of hERG closed and inactivated states. bioRxiv : the preprint server for biology (2024)
Diego Lopez Mateos, Vladimir Yarov-Yarovoy
Structural modeling of peptide toxin-ion channel interactions using RosettaDock. Proteins (2023)
Yanxiao Han, John R D Dawson, Kevin R DeMarco, Kyle C Rouen, Slava Bekker, Vladimir Yarov-Yarovoy, Colleen E Clancy, Yang Kevin Xiang, Igor Vorobyov
Elucidation of a dynamic interplay between a beta-2 adrenergic receptor, its agonist, and stimulatory G protein. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Yanxiao Han, John R D Dawson, Kevin R DeMarco, Kyle C Rouen, Slava Bekker, Vladimir Yarov-Yarovoy, Colleen E Clancy, Yang Kevin Xiang, Igor Vorobyov
Elucidation of a dynamic interplay between a beta-2 adrenergic receptor, its agonist, and stimulatory G protein. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Kyle C Rouen, Yanxiao Han, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating Molecular Mechanisms of Protoxin-2 State-specific Binding to the Human Na V 1.7 Channel. bioRxiv : the preprint server for biology (2023)
Khoa Ngo, Diego Lopez Mateos, Kyle C Rouen, Yanxiao Han, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating Molecular Mechanisms of Protoxin-2 State-specific Binding to the Human Na V 1.7 Channel. bioRxiv : the preprint server for biology (2023)
Leo C T Ng, Brandon J Harris, Megan Larmore, My C Ta, Thuy N Vien, Valerie L Tokars, Vladimir Yarov-Yarovoy, Paul G DeCaen
Energetic landscape of polycystin channel gating. EMBO reports (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Yanxiao Han, John R D Dawson, Kevin R DeMarco, Kyle C Rouen, Slava Bekker, Vladimir Yarov-Yarovoy, Colleen E Clancy, Yang Kevin Xiang, Igor Vorobyov
Elucidation of a dynamic interplay between a beta-2 adrenergic receptor, its agonist, and stimulatory G protein. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Yanxiao Han, John R D Dawson, Kevin R DeMarco, Kyle C Rouen, Slava Bekker, Vladimir Yarov-Yarovoy, Colleen E Clancy, Yang Kevin Xiang, Igor Vorobyov
Elucidation of a dynamic interplay between a beta-2 adrenergic receptor, its agonist, and stimulatory G protein. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Shisheng Li, Phuong Tran Nguyen, Simon Vu, Vladimir Yarov-Yarovoy, Jie Zheng
TRPV1 Opening is Stabilized Equally by Its Four Subunits. bioRxiv : the preprint server for biology (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Diego Lopez Mateos, Vladimir Yarov-Yarovoy
Structural Modeling of Peptide Toxin - Ion Channel Interactions using RosettaDock. Proteins (2023)
Yanxiao Han, John R D Dawson, Kevin R DeMarco, Kyle C Rouen, Slava Bekker, Vladimir Yarov-Yarovoy, Colleen E Clancy, Yang Kevin Xiang, Igor Vorobyov
Elucidation of a dynamic interplay between a beta-2 adrenergic receptor, its agonist, and stimulatory G protein. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Flávia Pereira Franco, Pingxi Xu, Brandon J Harris, Vladimir Yarov-Yarovoy, Walter S Leal
Single amino acid residue mediates reciprocal specificity in two mosquito odorant receptors. eLife 11 (2022)
Flávia Pereira Franco, Pingxi Xu, Brandon J Harris, Vladimir Yarov-Yarovoy, Walter S Leal
Single amino acid residue mediates reciprocal specificity in two mosquito odorant receptors. eLife 11 (2022)
Phuong T Nguyen, Hai M Nguyen, Karen M Wagner, Robert G Stewart, Vikrant Singh, Parashar Thapa, Yi-Je Chen, Mark W Lillya, Anh Tuan Ton, Richard Kondo, Andre Ghetti, Michael W Pennington, Bruce D Hammock, Theanne N Griffith, Jon T Sack, Heike Wulff, Vladimir Yarov-Yarovoy
Computational design of peptides to target Na V 1.7 channel with high potency and selectivity for the treatment of pain. eLife 11 (2022)
Ruth A Pumroy, Anna D Protopopova, Tabea C Fricke, Iris U Lange, Ferdinand M Haug, Phuong T Nguyen, Pamela N Gallo, Bárbara B Sousa, Gonçalo J L Bernardes, Vladimir Yarov-Yarovoy, Andreas Leffler, Vera Y Moiseenkova-Bell
Structural insights into TRPV2 activation by small molecules. Nature communications 13 (1) (2022)
Flávia Pereira Franco, Pingxi Xu, Brandon J Harris, Vladimir Yarov-Yarovoy, Walter S Leal
Single amino acid residue mediates reciprocal specificity in two mosquito odorant receptors. eLife 11 (2022)
Phuong T Nguyen, Hai M Nguyen, Karen M Wagner, Robert G Stewart, Vikrant Singh, Parashar Thapa, Yi-Je Chen, Mark W Lillya, Anh Tuan Ton, Richard Kondo, Andre Ghetti, Michael W Pennington, Bruce D Hammock, Theanne N Griffith, Jon T Sack, Heike Wulff, Vladimir Yarov-Yarovoy
Computational design of peptides to target Na V 1.7 channel with high potency and selectivity for the treatment of pain. eLife 11 (2022)
Phuong T Nguyen, Hai M Nguyen, Karen M Wagner, Robert Stewart, Vikrant Singh, Parashar Thapa, Yi-Je Chen, Mark W Lillya, Anh Tuan Ton, Richard Kondo, Andre Ghetti, Michael W Pennington, Bruce D Hammock, Theanne N Griffith, Jon T Sack, Heike Wulff, Vladimir Yarov-Yarovoy
Computational design of peptides to target Na V 1.7 channel with high potency and selectivity for the treatment of pain. eLife 11 (2022)
Flávia Pereira Franco, Pingxi Xu, Brandon J Harris, Vladimir Yarov-Yarovoy, Walter S Leal
Single amino acid residue mediates reciprocal specificity in two mosquito odorant receptors. eLife 11 (2022)
Flávia Pereira Franco, Pingxi Xu, Brandon J Harris, Vladimir Yarov-Yarovoy, Walter S Leal
Single amino acid residue mediates reciprocal specificity in two mosquito odorant receptors. eLife 11 (2022)
Phuong T Nguyen, Hai M Nguyen, Karen M Wagner, Robert G Stewart, Vikrant Singh, Parashar Thapa, Yi-Je Chen, Mark W Lillya, Anh Tuan Ton, Richard Kondo, Andre Ghetti, Michael W Pennington, Bruce D Hammock, Theanne N Griffith, Jon T Sack, Heike Wulff, Vladimir Yarov-Yarovoy
Computational design of peptides to target Na V 1.7 channel with high potency and selectivity for the treatment of pain. eLife 11 (2022)
Phuong T Nguyen, Hai M Nguyen, Karen M Wagner, Robert G Stewart, Vikrant Singh, Parashar Thapa, Yi-Je Chen, Mark W Lillya, Anh Tuan Ton, Richard Kondo, Andre Ghetti, Michael W Pennington, Bruce D Hammock, Theanne N Griffith, Jon T Sack, Heike Wulff, Vladimir Yarov-Yarovoy
Computational design of peptides to target Na V 1.7 channel with high potency and selectivity for the treatment of pain. eLife 11 (2022)
Flávia Pereira Franco, Pingxi Xu, Brandon J Harris, Vladimir Yarov-Yarovoy, Walter S Leal
Single amino acid residue mediates reciprocal specificity in two mosquito odorant receptors. eLife 11 (2022)
Phuong T Nguyen, Hai M Nguyen, Karen M Wagner, Robert G Stewart, Vikrant Singh, Parashar Thapa, Yi-Je Chen, Mark W Lillya, Anh Tuan Ton, Richard Kondo, Andre Ghetti, Michael W Pennington, Bruce D Hammock, Theanne N Griffith, Jon T Sack, Heike Wulff, Vladimir Yarov-Yarovoy
Computational design of peptides to target Na V 1.7 channel with high potency and selectivity for the treatment of pain. eLife 11 (2022)
Julia Koehler Leman, Sergey Lyskov, Steven M Lewis, Jared Adolf-Bryfogle, Rebecca F Alford, Kyle A Barlow, Ziv Ben-Aharon, Daniel P Farrell, Jason S Fell, William A Hansen, Ameya Harmalkar, Jeliazko R Jeliazkov, Georg Kuenze, Justyna Dorota Kryś, Ajasja Ljubetič, Amanda L Loshbaugh, Jack Maguire, Rocco Moretti, Vikram Khipple Mulligan, Morgan L Nance, Phuong T Nguyen, Shane Ó Conchúir, Shourya S Roy Burman, Rituparna Samanta, Shannon T Smith, Frank Teets, Johanna K S Tiemann, Andrew Watkins, Hope Woods, Brahm J Yachnin, Christopher D Bahl, Chris Bailey-Kellogg, Julien S Baker, Rachel J Hagey, Frank DiMaio, Sagar D Khare, Tanja Kortemme, Jason W Labonte, Kresten Lindorff-Larsen, Jens Meiler, William R Schief, Ora Schueler-Furman, Justin B Siegel, Amelie Stein, Vladimir Yarov-Yarovoy, Brian Kuhlman, Andrew Leaver-Fay, Dominik Gront, Jeffrey J Gray, Richard A Bonneau
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks. Nature communications 12 (1) (2021)
Maria C Perez-Flores, Jeong H Lee, Seojin Park, Xiao-Dong Zhang, Choong-Ryoul Sihn, Hannah A Ledford, Wenying Wang, Ebenezer N Yamoah, Valeriy Timofeyev, Vladimir Yarov-Yarovoy, Nipavan Chiamvimonvat, Richard D Rabbitt
Cooperativity of Kv7.4 channels confers ultrafast electromechanical sensitivity and emergent properties in cochlear outer hair cells. Science advances 6 (15) (2020)
Matthew Turner, David E Anderson, Peter Bartels, Madeline Nieves-Cintron, Andrea M Coleman, Peter B Henderson, Kwun Nok Mimi Man, Pang-Yen Tseng, Vladimir Yarov-Yarovoy, Donald M Bers, Manuel F Navedo, Mary C Horne, James B Ames, Johannes W Hell
α-Actinin-1 promotes activity of the L-type Ca2+ channel Cav 1.2. The EMBO journal 39 (5) (2020)
Simon Vu, Vikrant Singh, Heike Wulff, Vladimir Yarov-Yarovoy, Jie Zheng
New capsaicin analogs as molecular rulers to define the permissive conformation of the mouse TRPV1 ligand-binding pocket. eLife 9 (2020)
Leo C T Ng, Thuy N Vien, Vladimir Yarov-Yarovoy, Paul G DeCaen
Opening TRPP2 (PKD2L1) requires the transfer of gating charges. Proceedings of the National Academy of Sciences of the United States of America 116 (31) (2019)
Dustin D Heeney, Vladimir Yarov-Yarovoy, Maria L Marco
Sensitivity to the two peptide bacteriocin plantaricin EF is dependent on CorC, a membrane-bound, magnesium/cobalt efflux protein. MicrobiologyOpen 8 (11) (2019)
Phuong T Nguyen, Kevin R DeMarco, Igor Vorobyov, Colleen E Clancy, Vladimir Yarov-Yarovoy
Structural basis for antiarrhythmic drug interactions with the human cardiac sodium channel. Proceedings of the National Academy of Sciences of the United States of America 116 (8) (2019)
Inderpreet Kaur, Vladimir Yarov-Yarovoy, Lyndsey M Kirk, Kristopher E Plambeck, Eden V Barragan, Eric S Ontiveros, Elva Díaz
Activity-Dependent Palmitoylation Controls SynDIG1 Stability, Localization, and Function. The Journal of neuroscience : the official journal of the Society for Neuroscience 36 (29) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Vladimir Yarov-Yarovoy