Identification of Key Genes Affecting Flavor Formation in Beijing-You Chicken Meat by Transcriptome and Metabolome Analyses.
Kai GaiYu GeDapeng LiuHe ZhangBailin CongShihao GuoYizheng LiuKai XingXiaolong QiXiangguo WangLong-Fei XiaoCheng LongYong GuoXihui ShengPublished in: Foods (Basel, Switzerland) (2023)
The flavor of chicken meat is influenced by muscle metabolites and regulatory genes and varies with age. In this study, the metabolomic and transcriptomic data of breast muscle at four developmental stages (days 1, 56, 98, and 120) of Beijing-You chickens (BJYs) were integrated and 310 significantly changed metabolites (SCMs) and 7,225 differentially expressed genes (DEGs) were identified. A Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that SCMs and DEGs were enriched in amino acid, lipid, and inosine monophosphate (IMP) metabolism pathways. Furthermore, genes highly associated with flavor amino acids, lipids, and IMP were identified by a weighted gene co-expression network analysis (WGCNA), including cystathionine β-synthase ( CBS ), glycine amidinotransferase ( GATM ), glutamate decarboxylase 2 ( GAD2 ), patatin-like phospholipasedomain containing 6 ( PNPLA6 ), low-specificity L-threonine aldolase ( ItaE ), and adenylate monophosphate deaminase 1 ( AMPD1 ) genes. A regulatory network related to the accumulation of key flavor components was constructed. In conclusion, this study provides new perspectives regarding the regulatory mechanisms of flavor metabolites in chicken meat during development.
Keyphrases
- genome wide
- genome wide identification
- bioinformatics analysis
- amino acid
- network analysis
- transcription factor
- ms ms
- genome wide analysis
- air pollution
- gene expression
- dna methylation
- skeletal muscle
- magnetic resonance
- single cell
- poor prognosis
- machine learning
- magnetic resonance imaging
- particulate matter
- electronic health record
- fatty acid
- big data