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Mechanistic insights into G-protein coupling with an agonist-bound G-protein-coupled receptor.

Hossein BatebiGuillermo Pérez HernándezSabrina N RahmanBaoliang LanAntje KampradMingyu ShiDavid SpeckJohanna K S TiemannRamon Guixà-GonzalézFranziska ReinhardtPeter F StadlerMakaía M Papasergi-ScottGeorgios SkiniotisPatrick ScheererBrian K KobilkaJesper M MathiesenXiangyu LiuPeter W Hildebrand
Published in: Nature structural & molecular biology (2024)
G-protein-coupled receptors (GPCRs) activate heterotrimeric G proteins by promoting guanine nucleotide exchange. Here, we investigate the coupling of G proteins with GPCRs and describe the events that ultimately lead to the ejection of GDP from its binding pocket in the Gα subunit, the rate-limiting step during G-protein activation. Using molecular dynamics simulations, we investigate the temporal progression of structural rearrangements of GDP-bound G s protein (G s ·GDP; hereafter G s GDP ) upon coupling to the β 2 -adrenergic receptor (β 2 AR) in atomic detail. The binding of G s GDP to the β 2 AR is followed by long-range allosteric effects that significantly reduce the energy needed for GDP release: the opening of α1-αF helices, the displacement of the αG helix and the opening of the α-helical domain. Signal propagation to the G s occurs through an extended receptor interface, including a lysine-rich motif at the intracellular end of a kinked transmembrane helix 6, which was confirmed by site-directed mutagenesis and functional assays. From this β 2 AR-G s GDP intermediate, G s undergoes an in-plane rotation along the receptor axis to approach the β 2 AR-G s empty state. The simulations shed light on how the structural elements at the receptor-G-protein interface may interact to transmit the signal over 30 Å to the nucleotide-binding site. Our analysis extends the current limited view of nucleotide-free snapshots to include additional states and structural features responsible for signaling and G-protein coupling specificity.
Keyphrases
  • molecular dynamics simulations
  • room temperature
  • binding protein
  • dna binding
  • small molecule
  • high throughput
  • crispr cas
  • ionic liquid
  • single cell
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