Cellular and Molecular Biological Alterations after Photon, Proton, and Carbon Ions Irradiation in Human Chondrosarcoma Cells Linked with High-Quality Physics Data.
Birgit LohbergerSandra BarnaDietmar GlänzerNicole EckSylvia Kerschbaum-GruberKatharina StasnyAndreas LeithnerDietmar GeorgPublished in: International journal of molecular sciences (2022)
Chondrosarcomas are particularly difficult to treat due to their resistance to chemotherapy and radiotherapy. However, particle therapy can enhance local control and patient survival rates. To improve our understanding of the basic cellular radiation response, as a function of dose and linear energy transfer (LET), we developed a novel water phantom-based setup for cell culture experiments and characterized it dosimetrically. In a direct comparison, human chondrosarcoma cell lines were analyzed with regard to their viability, cell proliferation, cell cycle, and DNA repair behavior after irradiation with X-ray, proton, and carbon ions. Our results clearly showed that cell viability and proliferation were inhibited according to the increasing ionization density, i.e., LET, of the irradiation modes. Furthermore, a prominent G 2 /M arrest was shown. Gene expression profiling proved the upregulation of the senescence genes CDKN1A (p21), CDKN2A (p16NK4a), BMI1, and FOXO4 after particle irradiation. Both proton or C-ion irradiation caused a positive regulation of the repair genes ATM, NBN, ATXR, and XPC, and a highly significant increase in XRCC1/2/3, ERCC1, XPC, and PCNA expression, with C-ions appearing to activate DNA repair mechanisms more effectively. The link between the physical data and the cellular responses is an important contribution to the improvement of the treatment system.
Keyphrases
- dna repair
- cell cycle
- dna damage
- cell proliferation
- endothelial cells
- genome wide
- dna damage response
- quantum dots
- radiation induced
- genome wide identification
- signaling pathway
- energy transfer
- poor prognosis
- induced apoptosis
- transcription factor
- induced pluripotent stem cells
- body mass index
- locally advanced
- pi k akt
- electronic health record
- physical activity
- case report
- magnetic resonance
- machine learning
- data analysis
- pluripotent stem cells
- dna methylation
- water soluble
- squamous cell carcinoma
- big data
- high resolution
- copy number
- genome wide analysis
- free survival
- artificial intelligence
- dual energy
- binding protein
- long non coding rna
- nk cells
- tandem mass spectrometry
- clinical evaluation
- mass spectrometry