Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone.

Lorenzo Pantolini Gabriel Studer Joana Pereira Janani Durairaj Gerardo Tauriello Torsten Schwede

Published in: Bioinformatics (Oxford, England) (2024)

The code to run EBA and reproduce the analysis described in this article is available at: https://git.scicore.unibas.ch/schwede/EBA and https://git.scicore.unibas.ch/schwede/eba_benchmark.

Keyphrases

room temperature
autism spectrum disorder
binding protein