Torsten Schwede

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 39

Top Venues

Proteins

mSphere

Nucleic acids research

Bioinformatics (Oxford, England)

University of Basel

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Basel

Switzerland

Professor :: Biozentrum

Publications

Andrew M Waterhouse, Gabriel Studer, Xavier Robin, Stefan Bienert, Gerardo Tauriello, Torsten Schwede
The structure assessment web server: for proteins, complexes and more. Nucleic acids research 52 (W1) (2024)
Lorenzo Pantolini, Gabriel Studer, Joana Pereira, Janani Durairaj, Gerardo Tauriello, Torsten Schwede
Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone. Bioinformatics (Oxford, England) 40 (1) (2024)
Lorenzo Pantolini, Gabriel Studer, Joana Pereira, Janani Durairaj, Gerardo Tauriello, Torsten Schwede
Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone. Bioinformatics (Oxford, England) 40 (1) (2024)
Janani Durairaj, Océane M Follonier, Karoline Leuzinger, Leila T Alexander, Maud Wilhelm, Joana Pereira, Caroline A Hillenbrand, Fabian H Weissbach, Torsten Schwede, Hans H Hirsch
Structural implications of BK polyomavirus sequence variations in the major viral capsid protein Vp1 and large T-antigen: a computational study. mSphere 9 (4) (2024)
Janani Durairaj, Océane M Follonier, Karoline Leuzinger, Leila T Alexander, Maud Wilhelm, Joana Pereira, Caroline A Hillenbrand, Fabian H Weissbach, Torsten Schwede, Hans H Hirsch
Structural implications of BK polyomavirus sequence variations in the major viral capsid protein Vp1 and large T-antigen: a computational study. mSphere 9 (4) (2024)
Andrew M Waterhouse, Gabriel Studer, Xavier Robin, Stefan Bienert, Gerardo Tauriello, Torsten Schwede
The structure assessment web server: for proteins, complexes and more. Nucleic acids research 52 (W1) (2024)
Janani Durairaj, Océane M Follonier, Karoline Leuzinger, Leila T Alexander, Maud Wilhelm, Joana Pereira, Caroline A Hillenbrand, Fabian H Weissbach, Torsten Schwede, Hans H Hirsch
Structural implications of BK polyomavirus sequence variations in the major viral capsid protein Vp1 and large T-antigen: a computational study. mSphere 9 (4) (2024)
Janani Durairaj, Océane M Follonier, Karoline Leuzinger, Leila T Alexander, Maud Wilhelm, Joana Pereira, Caroline A Hillenbrand, Fabian H Weissbach, Torsten Schwede, Hans H Hirsch
Structural implications of BK polyomavirus sequence variations in the major viral capsid protein Vp1 and large T-antigen: a computational study. mSphere (2024)
Lorenzo Pantolini, Gabriel Studer, Joana Pereira, Janani Durairaj, Gerardo Tauriello, Torsten Schwede
Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone. Bioinformatics (Oxford, England) 40 (1) (2024)
Andrew M Waterhouse, Gabriel Studer, Xavier Robin, Stefan Bienert, Gerardo Tauriello, Torsten Schwede
The structure assessment web server: for proteins, complexes and more. Nucleic acids research (2024)
Gabriel Studer, Gerardo Tauriello, Torsten Schwede
Assessment of the assessment-All about complexes. Proteins (2023)
Romina Marone, Emmanuelle Landmann, Anna Devaux, Rosalba Lepore, Denis Seyres, Jessica Zuin, Thomas Burgold, Corinne Engdahl, Giuseppina Capoferri, Alessandro Dell'Aglio, Clément Larrue, Federico Simonetta, Julia Rositzka, Manuel Rhiel, Geoffroy Andrieux, Danielle N Gallagher, Markus S Schröder, Amélie Wiederkehr, Alessandro Sinopoli, Valentin Do Sacramento, Anna Haydn, Laura Garcia-Prat, Christopher Divsalar, Anna Camus, Liwen Xu, Lorenza Bordoli, Torsten Schwede, Matthew H Porteus, Jérome Tamburini, Jacob E Corn, Toni Cathomen, Tatjana I Cornu, Stefanie Urlinger, Lukas T Jeker
Epitope-engineered human hematopoietic stem cells are shielded from CD123-targeted immunotherapy. The Journal of experimental medicine 220 (12) (2023)
Leila Tamara Alexander, Janani Durairaj, Andriy Kryshtafovych, Luciano Andrés Abriata, Yusupha Bayo, Gira Bhabha, Cécile Breyton, Simon G Caulton, James Chen, Séraphine Degroux, Damian C Ekiert, Benedikte S Erlandsen, Peter L Freddolino, Dominic Gilzer, Chris Greening, Jonathan M Grimes, Rhys W Grinter, Manickam Gurusaran, Marcus D Hartmann, Charlie J Hitchman, Jeremy Russell Keown, Ashleigh Kropp, Petri Kursula, Andrew Lee Lovering, Bruno Lemaître, Andrea Lia, Shiheng Liu, Maria Logotheti, Shuze Lu, Sigurbjörn Markússon, Mitchell D Miller, George Minasov, Hartmut H Niemann, Felipe Opazo, George N Philips, Owen Richard Davies, Samuel Rommelaere, Monica Rosas-Lemus, Pietro Roversi, Karla J F Satchell, Nathan Smith, Mark A Wilson, Kuan-Lin Wu, Xian Xia, Han Xiao, Wenhua Zhang, Z Hong Zhou, Krzysztof Fidelis, Andriy Kryshtafovych, John Moult, Torsten Schwede
Protein target highlights in CASP15: Analysis of models by structure providers. Proteins (2023)
Hugo Schweke, Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals, Alix Lhéritier, Juan Fernandez-Recio, Luis Angel Rodríguez-Lumbreras, Ora Schueler-Furman, Julia K Varga, Brian Jiménez-García, Manon F Réau, Alexandre M J J Bonvin, Castrense Savojardo, Pier-Luigi Martelli, Rita Casadio, Jérôme Tubiana, Haim J Wolfson, Romina Oliva, Didier Barradas-Bautista, Tiziana Ricciardelli, Luigi Cavallo, Česlovas Venclovas, Kliment Olechnovič, Raphael Guerois, Jessica Andreani, Juliette Martin, Xiao Wang, Genki Terashi, Daipayan Sarkar, Charles W Christoffer, Tunde Aderinwale, Jacob Verburgt, Daisuke Kihara, Anthony Marchand, Bruno E Correia, Rui Duan, Liming Qiu, Xianjin Xu, Shuang Zhang, Xiaoqin Zou, Sucharita Dey, Roland L Dunbrack, Emmanuel D Levy, Shoshana J Wodak
Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study. Proteomics (2023)
Andriy Kryshtafovych, Torsten Schwede, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult
Critical assessment of methods of protein structure prediction (CASP)-Round XV. Proteins (2023)
Janani Durairaj, Andrew M Waterhouse, Toomas Mets, Tetiana Brodiazhenko, Minhal Abdullah, Gabriel Studer, Gerardo Tauriello, Mehmet Akdel, Antonina Andreeva, Alex Bateman, Tanel Tenson, Vasili Hauryliuk, Torsten Schwede, Joana Pereira
Uncovering new families and folds in the natural protein universe. Nature (2023)
Annika Topitsch, Torsten Schwede, Joana Pereira
Outer membrane β-barrel structure prediction through the lens of AlphaFold2. Proteins (2023)
Michèle Leemann, Ander Sagasta, Jerome Eberhardt, Torsten Schwede, Xavier Robin, Janani Durairaj
Automated benchmarking of combined protein structure and ligand conformation prediction. Proteins (2023)
Xavier Robin, Gabriel Studer, Janani Durairaj, Jerome Eberhardt, Torsten Schwede, W Patrick Walters
Assessment of protein-ligand complexes in CASP15. Proteins (2023)
Andriy Kryshtafovych, Maciej Antczak, Marta Szachniuk, Tomasz Zok, Rachael C Kretsch, Ramya Rangan, Phillip Pham, Rachel J Hagey, Xavier Robin, Gabriel Studer, Janani Durairaj, Jerome Eberhardt, Aaron Sweeney, Maya Topf, Torsten Schwede, Krzysztof Fidelis, John Moult
New prediction categories in CASP15. Proteins (2023)
Mihaly Varadi, Sreenath Nair, Ian Sillitoe, Gerardo Tauriello, Stephen Anyango, Stefan Bienert, Clemente Borges, Mandar S Deshpande, Tim Green, Demis Hassabis, Andras Hatos, Tamás Hegedűs, Maarten L Hekkelman, Robbie P Joosten, John M Jumper, Agata Laydon, Dmitry S Molodenskiy, Damiano Piovesan, Edoardo Salladini, Steven L Salzberg, Markus J Sommer, Martin Steinegger, Erzsebet Suhajda, Dmitri I Svergun, Luiggi Tenorio-Ku, Silvio C E Tosatto, Kathryn Tunyasuvunakool, Andrew Mark Waterhouse, Augustin Žídek, Torsten Schwede, Christine A Orengo, Sameer Velankar
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. GigaScience 11 (2022)
Andriy Kryshtafovych, Torsten Schwede, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult
Critical assessment of methods of protein structure prediction (CASP)-Round XIV. Proteins 89 (12) (2021)
Leila Tamara Alexander, Rosalba Lepore, Andriy Kryshtafovych, Athanassios Adamopoulos, Markus Alahuhta, Ann M Arvin, Yannick J Bomble, Bettina Böttcher, Cécile Breyton, Valerio Chiarini, Naga Babu Chinnam, Wah Chiu, Krzysztof Fidelis, Rhys W Grinter, Gagan D Gupta, Marcus D Hartmann, Christopher S Hayes, Tatjana Heidebrecht, Andrea Ilari, Andrzej Joachimiak, Youngchang Kim, Romain Linares, Andrew L Lovering, Vladimir V Lunin, Andrei N Lupas, Cihan Makbul, Karolina Michalska, John Moult, Prasun K Mukherjee, William Sam Nutt, Stefan L Oliver, Anastassis Perrakis, Lucy Stols, John A Tainer, Maya Topf, Susan E Tsutakawa, Mauricio Valdivia-Delgado, Torsten Schwede
Target highlights in CASP14: Analysis of models by structure providers. Proteins 89 (12) (2021)
Alfredo Mari, Tim Roloff, Madlen Stange, Kirstine K Søgaard, Erblin Asllanaj, Gerardo Tauriello, Leila Tamara Alexander, Michael Schweitzer, Karoline Leuzinger, Alexander Gensch, Aurélien Emmanuel Martinez, Julia Bielicki, Hans Pargger, Martin Siegemund, Christian H Nickel, Roland Bingisser, Michael Osthoff, Stefano Bassetti, Parham Sendi, Manuel Battegay, Catia Marzolini, Helena M B Seth-Smith, Torsten Schwede, Hans H Hirsch, Adrian Egli
Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance. Microorganisms 9 (5) (2021)
Xavier Robin, Juergen Haas, Rafal Gumienny, Anna Smolinski, Gerardo Tauriello, Torsten Schwede
Continuous Automated Model EvaluatiOn (CAMEO)-Perspectives on the future of fully automated evaluation of structure prediction methods. Proteins 89 (12) (2021)
Gabriel Studer, Gerardo Tauriello, Stefan Bienert, Marco Biasini, Niklaus Johner, Torsten Schwede
ProMod3-A versatile homology modelling toolbox. PLoS computational biology 17 (1) (2021)
Ricardo D Righetto, Leonie Anton, Ricardo Adaixo, Roman Peter Jakob, Jasenko Zivanov, Mohamed-Ali Mahi, Philippe Ringler, Torsten Schwede, Timm Maier, Henning Stahlberg
High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica. Nature communications 11 (1) (2020)
Silvia Gervasoni, Giulio Vistoli, Carmine Talarico, Candida Manelfi, Andrea Rosario Beccari, Gabriel Studer, Gerardo Tauriello, Andrew Mark Waterhouse, Torsten Schwede, Alessandro Pedretti
A Comprehensive Mapping of the Druggable Cavities within the SARS-CoV-2 Therapeutically Relevant Proteins by Combining Pocket and Docking Searches as Implemented in Pockets 2.0. International journal of molecular sciences 21 (14) (2020)
Ricardo D Righetto, Leonie Anton, Ricardo Adaixo, Roman Peter Jakob, Jasenko Zivanov, Mohamed-Ali Mahi, Philippe Ringler, Torsten Schwede, Timm Maier, Henning Stahlberg
Author Correction: High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica. Nature communications 11 (1) (2020)
Jianlin Cheng, Myong-Ho Choe, Arne Elofsson, Kun-Sop Han, Jie Hou, Ali H A Maghrabi, Liam James McGuffin, David Menéndez-Hurtado, Kliment Olechnovič, Torsten Schwede, Gabriel Studer, Karolis Uziela, Česlovas Venclovas, Björn Wallner
Estimation of model accuracy in CASP13. Proteins 87 (12) (2019)
Rosalba Lepore, Andriy Kryshtafovych, Markus Alahuhta, Harshul A Veraszto, Yannick J Bomble, Joshua C Bufton, Alex N Bullock, Cody Caba, Hongnan Cao, Owen R Davies, Ambroise Desfosses, Matthew Dunne, Krzysztof Fidelis, Celia W Goulding, Manickam Gurusaran, Irina Gutsche, Christopher J Harding, Marcus D Hartmann, Christopher S Hayes, Andrzej Joachimiak, Petr G Leiman, Peter Loppnau, Andrew L Lovering, Vladimir V Lunin, Karolina Michalska, Ignacio Mir-Sanchis, A K Mitra, John Moult, George N Phillips, Daniel M Pinkas, Phoebe A Rice, Yufeng Tong, Maya Topf, Jonathan D Walton, Torsten Schwede
Target highlights in CASP13: Experimental target structures through the eyes of their authors. Proteins 87 (12) (2019)
Juergen Haas, Rafal Gumienny, Alessandro Barbato, Flavio Ackermann, Gerardo Tauriello, Martino Bertoni, Gabriel Studer, Anna Smolinski, Torsten Schwede
Introducing "best single template" models as reference baseline for the Continuous Automated Model Evaluation (CAMEO). Proteins 87 (12) (2019)
Andriy Kryshtafovych, Torsten Schwede, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult
Critical assessment of methods of protein structure prediction (CASP)-Round XIII. Proteins 87 (12) (2019)
Andriy Kryshtafovych, Reinhard Albrecht, Arnaud Baslé, Pedro Bule, Alessandro T Caputo, Ana Luísa Carvalho, Kinlin L Chao, Ron Diskin, Krzysztof Fidelis, Carlos M G A Fontes, Folmer Fredslund, Harry J Gilbert, Celia W Goulding, Marcus D Hartmann, Christopher S Hayes, Osnat Herzberg, Johan C Hill, Andrzej Joachimiak, Gert-Wieland Kohring, Roman I Koning, Leila Lo Leggio, Marco Mangiagalli, Karolina Michalska, John Moult, Shabir Najmudin, Marco Nardini, Valentina Nardone, Didier Ndeh, Thanh-Hong Nguyen, Guido Pintacuda, Sandra Postel, Mark J van Raaij, Pietro Roversi, Amir Shimon, Abhimanyu K Singh, Eric John Sundberg, Kaspars Tars, Nicole Zitzmann, Torsten Schwede
Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016). Proteins (2017)
Aleix Lafita, Spencer E Bliven, Andriy Kryshtafovych, Martino Bertoni, Bohdan Monastyrskyy, Jose M Duarte, Torsten Schwede, Guido Capitani
Assessment of protein assembly prediction in CASP12. Proteins (2017)
Martino Bertoni, Florian Kiefer, Marco Biasini, Lorenza Bordoli, Torsten Schwede
Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology. Scientific reports 7 (1) (2017)
Andriy Kryshtafovych, Bohdan Monastyrskyy, Krzysztof Fidelis, John Moult, Torsten Schwede, Anna Tramontano
Evaluation of the template-based modeling in CASP12. Proteins (2017)
John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Torsten Schwede, Anna Tramontano
Critical assessment of methods of protein structure prediction (CASP)-Round XII. Proteins (2017)
Stefan Bienert, Andrew Waterhouse, Tjaart A P de Beer, Gerardo Tauriello, Gabriel Studer, Lorenza Bordoli, Torsten Schwede
The SWISS-MODEL Repository-new features and functionality. Nucleic acids research 45 (D1) (2016)

Torsten Schwede.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Torsten Schwede