A Novel Single Vector Intersectional AAV Strategy for Interrogating Cellular Diversity and Brain Function.
Alex C HughesBrittany G PollardBei-Si XuJesse W GammonsPhillip ChapmanJay B BikoffLindsay A SchwarzPublished in: bioRxiv : the preprint server for biology (2023)
As the discovery of cellular diversity in the brain accelerates, so does the need for functional tools that target cells based on multiple features, such as gene expression and projection target. By selectively driving recombinase expression in a feature-specific manner, one can utilize intersectional strategies to conditionally promote payload expression only where multiple features overlap. We developed Conditional Viral Expression by Ribozyme Guided Degradation (ConVERGD), a single-construct intersectional targeting strategy that combines a self-cleaving ribozyme with traditional FLEx switches. ConVERGD offers benefits over existing platforms, such as expanded intersectionality, the ability to accommodate larger and more complex payloads, and a vector design that is easily modified to better facilitate rapid toolkit expansion. To demonstrate its utility for interrogating neural circuitry, we employed ConVERGD to target an unexplored subpopulation of norepinephrine (NE)-producing neurons within the rodent locus coeruleus (LC) identified via single-cell transcriptomic profiling to co-express the stress-related endogenous opioid gene prodynorphin ( Pdyn ). These studies showcase ConVERGD as a versatile tool for targeting diverse cell types and reveal Pdyn -expressing NE + LC neurons as a small neuronal subpopulation capable of driving anxiogenic behavioral responses in rodents.
Keyphrases
- single cell
- poor prognosis
- gene expression
- rna seq
- high throughput
- spinal cord
- resting state
- induced apoptosis
- dna methylation
- white matter
- machine learning
- cancer therapy
- cerebral ischemia
- long non coding rna
- stem cells
- chronic pain
- small molecule
- simultaneous determination
- mass spectrometry
- magnetic resonance imaging
- multiple sclerosis
- mesenchymal stem cells
- bone marrow
- deep learning
- transcription factor
- functional connectivity
- pain management
- cell therapy
- case control
- signaling pathway
- blood brain barrier
- stress induced
- solid phase extraction
- high resolution