Profiles of immune infiltration in lung adenocarcinoma and their clinical significant: A gene-expression-based retrospective study.
Genwen ChenZhongyi DongDehua WuYuhan ChenPublished in: Journal of cellular biochemistry (2020)
Lung cancer is one of the fatal tumors. The tumor microenvironment plays a key role in regulating tumor progression. To figure out the role of tumor microenvironment in lung adenocarcinoma (LUAD), ESTIMATE algorithm was used to evaluate the immune scores in LUAD. Patients with low immune scores had a worse overall survival (OS) compared with high immune scores. Using RNA-Seq data of 489 patients in The Cancer Genome Atlas (TCGA), differentially expressed genes (DEGs) were identified between high- and low-immune score groups. Based on the DEGs, nine-gene signature was constructed by the least absolute shrinkage and selection operator Cox regression model in TCGA set. The signature demonstrated significant prognostic value in both TCGA and Gene Expression Omnibus database. Multivariate Cox regression analyses indicated that nine-genes signature was an independent prognostic factor. Subgroup analysis also revealed a robust prognostic ability of nine-gene signature. A nomogram with a C-index of 0.722 had a favorable power for predicting 3-, 5-, and 10-year survival for clinical use by integrating nine-gene signature and other clinical features. Co-expression and functional enrichment analysis showed that nine-gene signature was significantly associated with immune response and provided potential profound molecules for revealing the mechanism of tumor initiation and progression. In conclusion, we revealed the significance of immune infiltration and built a novel nine-gene signature as a reliable prognostic factor for patients with LUAD.
Keyphrases
- prognostic factors
- genome wide
- gene expression
- genome wide identification
- single cell
- rna seq
- dna methylation
- copy number
- immune response
- poor prognosis
- genome wide analysis
- end stage renal disease
- machine learning
- chronic kidney disease
- papillary thyroid
- risk assessment
- transcription factor
- electronic health record
- wastewater treatment
- inflammatory response
- squamous cell carcinoma
- toll like receptor
- intellectual disability
- autism spectrum disorder
- randomized controlled trial
- dendritic cells