Identifying patterns in amyotrophic lateral sclerosis progression from sparse longitudinal data.
Divya RamamoorthyKristen SeversonSoumya GhoshKaren Sachsnull nullJonathan D GlassChristina N Fourniernull nullnull nullTodd M HerringtonJames D BerryKenney NgErnest FraenkelPublished in: Nature computational science (2022)
The clinical presentation of amyotrophic lateral sclerosis (ALS), a fatal neurodegenerative disease, varies widely across patients, making it challenging to determine if potential therapeutics slow progression. We sought to determine whether there were common patterns of disease progression that could aid in the design and analysis of clinical trials. We developed an approach based on a mixture of Gaussian processes to identify clusters of patients sharing similar disease progression patterns, modeling their average trajectories and the variability in each cluster. We show that ALS progression is frequently nonlinear, with periods of stable disease preceded or followed by rapid decline. We also show that our approach can be extended to Alzheimer's and Parkinson's diseases. Our results advance the characterization of disease progression of ALS and provide a flexible modeling approach that can be applied to other progressive diseases.
Keyphrases
- amyotrophic lateral sclerosis
- end stage renal disease
- clinical trial
- newly diagnosed
- ejection fraction
- chronic kidney disease
- peritoneal dialysis
- prognostic factors
- multiple sclerosis
- healthcare
- randomized controlled trial
- depressive symptoms
- small molecule
- patient reported outcomes
- social media
- patient reported
- deep learning
- cognitive decline
- human health
- neural network
- double blind