Integrative genomic analyses identify candidate causal genes for calcific aortic valve stenosis involving tissue-specific regulation.
Sébastien ThériaultZhonglin LiErik AbnerJian'an LuanHasanga D ManikpurageUrsula HouessouPardis ZamaniMewen Briendnull nullDominique K BoudreauNathalie GaudreaultLily FrenetteDéborah ArgaudManel DahmeneFrançois DagenaisMarie-Annick ClavelPhilippe PibarotBenoit J ArsenaultS Matthijs BoekholdtNicholas J WarehamTõnu EskoPatrick MathieuYohan BossePublished in: Nature communications (2024)
There is currently no medical therapy to prevent calcific aortic valve stenosis (CAVS). Multi-omics approaches could lead to the identification of novel molecular targets. Here, we perform a genome-wide association study (GWAS) meta-analysis including 14,819 cases among 941,863 participants of European ancestry. We report 32 genomic loci, among which 20 are novel. RNA sequencing of 500 human aortic valves highlights an enrichment in expression regulation at these loci and prioritizes candidate causal genes. Homozygous genotype for a risk variant near TWIST1, a gene involved in endothelial-mesenchymal transition, has a profound impact on aortic valve transcriptomics. We identify five genes outside of GWAS loci by combining a transcriptome-wide association study, colocalization, and Mendelian randomization analyses. Using cross-phenotype and phenome-wide approaches, we highlight the role of circulating lipoproteins, blood pressure and inflammation in the disease process. Our findings pave the way for the development of novel therapies for CAVS.
Keyphrases
- aortic valve
- genome wide association study
- genome wide
- single cell
- copy number
- transcatheter aortic valve replacement
- aortic valve replacement
- transcatheter aortic valve implantation
- bioinformatics analysis
- genome wide identification
- aortic stenosis
- blood pressure
- dna methylation
- systematic review
- endothelial cells
- rna seq
- genome wide analysis
- poor prognosis
- stem cells
- oxidative stress
- healthcare
- bone marrow
- epithelial mesenchymal transition
- meta analyses
- heart failure
- coronary artery
- heart rate
- cell therapy
- long non coding rna
- pulmonary artery
- adipose tissue
- signaling pathway
- autism spectrum disorder
- pluripotent stem cells