Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates.
Shijie C ZhengGenevieve Stein-O'BrienLeandros BoukasLoyal A GoffKaspar D HansenPublished in: Genome biology (2023)
Our findings emphasize the importance of choices in the RNA velocity workflow and highlight critical limitations of data analysis. We advise against over-interpreting expression dynamics using RNA velocity, particularly in terms of speed. Finally, we emphasize that the use of RNA velocity in assessing the correctness of a low-dimensional embedding is circular.