Kaspar D Hansen (Kasper D Hansen)

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 31

Top Venues

bioRxiv : the preprint server for biology

PLoS genetics

Genome biology

Nature methods

Johns Hopkins University

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Johns Hopkins University

United States

Associate Professor :: Biostatistics

Johns Hopkins University

United States

Assistant Professor :: Biostatistics

Education History

University of California Berkeley

United States

PHD :: Biostatistics

University of Copenhagen

Denmark

MSC :: Mathematical Sciences

University of Copenhagen

Denmark

BSC :: Mathematical Sciences

Publications

Prashanthi Ravichandran, Princy Parsana, Rebecca Keener, Kaspar D Hansen, Alexis J Battle
Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene co-expression networks. bioRxiv : the preprint server for biology (2024)
Prashanthi Ravichandran, Princy Parsana, Rebecca Keener, Kaspar D Hansen, Alexis J Battle
Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene co-expression networks. bioRxiv : the preprint server for biology (2024)
Yi Wang, Kyla Woyshner, Chaichontat Sriworarat, Genevieve L Stein-O'Brien, Christopher A Walsh, Kaspar D Hansen
Multi-sample non-negative spatial factorization. bioRxiv : the preprint server for biology (2024)
Christine W Gao, WanYing Lin, Ryan C Riddle, Sheetal Chopra, Jiyoung Kim, Leandros Boukas, Kaspar D Hansen, Hans T Björnsson, Jill A Fahrner
Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1. PLoS genetics 20 (6) (2024)
Yi Wang, Kyla Woyshner, Chaichontat Sriworarat, Genevieve L Stein-O'Brien, Christopher A Walsh, Kaspar D Hansen
Multi-sample non-negative spatial factorization. bioRxiv : the preprint server for biology (2024)
Afrooz Razi, Christopher C Lo, Siruo Wang, Jeffery T Leek, Kaspar D Hansen
Genotype prediction of 336,463 samples from public expression data. bioRxiv : the preprint server for biology (2024)
Christine W Gao, WanYing Lin, Ryan C Riddle, Sheetal Chopra, Jiyoung Kim, Leandros Boukas, Kaspar D Hansen, Hans T Björnsson, Jill A Fahrner
Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1. PLoS genetics 20 (6) (2024)
Afrooz Razi, Christopher C Lo, Siruo Wang, Jeffery T Leek, Kaspar D Hansen
Genotype prediction of 336,463 samples from public expression data. bioRxiv : the preprint server for biology (2024)
Christine W Gao, WanYing Lin, Ryan C Riddle, Sheetal Chopra, Jiyoung Kim, Leandros Boukas, Kaspar D Hansen, Hans T Björnsson, Jill A Fahrner
Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1. PLoS genetics 20 (6) (2024)
Lukas M Weber, Arkajyoti Saha, Abhirup Datta, Kaspar D Hansen, Stephanie C Hicks
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes. Nature communications 14 (1) (2023)
Sean K Maden, Brian Walsh, Kyle Ellrott, Kaspar D Hansen, Reid F Thompson, Abhinav Nellore
recountmethylation enables flexible analysis of public blood DNA methylation array data. Bioinformatics advances 3 (1) (2023)
Phillip Wulfridge, Adam Davidovich, Anna C Salvador, Gabrielle C Manno, Rakel Tryggvadottir, Adrian Idrizi, M Nazmul Huda, Brian J Bennett, Leslie G Adams, Kaspar D Hansen, David W Threadgill, Andrew P Feinberg
Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation. PLoS genetics 19 (10) (2023)
Albert Kuo, Kaspar D Hansen, Stephanie C Hicks
Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing data. Biostatistics (Oxford, England) (2023)
Phillip Wulfridge, Adam Davidovich, Anna C Salvador, Gabrielle C Manno, Rakel Tryggvadottir, Adrian Idrizi, M Nazmul Huda, Brian J Bennett, L Garry Adams, Kaspar D Hansen, David W Threadgill, Andrew P Feinberg
Precision pharmacological reversal of genotype-specific diet-induced metabolic syndrome in mice informed by transcriptional regulation. bioRxiv : the preprint server for biology (2023)
Emily K W Lo, Brian M Mears, Hans Carlo Maurer, Adrian Idrizi, Kaspar D Hansen, Elizabeth D Thompson, Ralph H Hruban, Kenneth P Olive, Andrew P Feinberg
Comprehensive DNA methylation analysis indicates that pancreatic intraepithelial neoplasia lesions are acinar-derived and epigenetically primed for carcinogenesis. Cancer research (2023)
Phillip Wulfridge, Adam Davidovich, Anna C Salvador, Gabrielle C Manno, Rakel Tryggvadottir, Adrian Idrizi, M Nazmul Huda, Brian J Bennett, L Garry Adams, Kaspar D Hansen, David W Threadgill, Andrew P Feinberg
Precision pharmacological reversal of genotype-specific diet-induced metabolic syndrome in mice informed by transcriptional regulation. bioRxiv : the preprint server for biology (2023)
Shijie C Zheng, Genevieve Stein-O'Brien, Leandros Boukas, Loyal A Goff, Kaspar D Hansen
Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates. Genome biology 24 (1) (2023)
Sean K Maden, Brian Walsh, Kyle Ellrott, Kaspar D Hansen, Reid F Thompson, Abhinav Nellore
recountmethylation enables flexible analysis of public blood DNA methylation array data. Bioinformatics advances 3 (1) (2023)
Leandros Boukas, Teresa Romeo Luperchio, Afrooz Razi, Kaspar D Hansen, Hans Tomas Bjornsson
Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice. bioRxiv : the preprint server for biology (2023)
Christine W Gao, WanYing Lin, Ryan C Riddle, Priyanka Kushwaha, Leandros Boukas, Hans Tomas Bjornsson, Kaspar D Hansen, Jill A Fahrner
Novel mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition. bioRxiv : the preprint server for biology (2023)
Shijie C Zheng, Genevieve Stein-O'Brien, Jonathan J Augustin, Jared Slosberg, Giovanni A Carosso, Briana Winer, Gloria Shin, Hans T Bjornsson, Loyal A Goff, Kaspar D Hansen
Universal prediction of cell-cycle position using transfer learning. Genome biology 23 (1) (2022)
Yi Wang, Stephanie C Hicks, Kaspar D Hansen
Addressing the mean-correlation relationship in co-expression analysis. PLoS computational biology 18 (3) (2022)
Sean K Maden, Reid F Thompson, Kaspar D Hansen, Abhinav Nellore
Human methylome variation across Infinium 450K data on the Gene Expression Omnibus. NAR genomics and bioinformatics 3 (2) (2021)
Lindsay F Rizzardi, Peter F Hickey, Adrian Idrizi, Rakel Tryggvadóttir, Colin M Callahan, Kimberly E Stephens, Sean D Taverna, Hao Zhang, Sinan Ramazanoglu, null null, Kaspar D Hansen, Andrew P Feinberg
Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits. Genome biology 22 (1) (2021)
Isac Lee, Roham Razaghi, Timothy Gilpatrick, Michael Molnar, Ariel Gershman, Norah Sadowski, Fritz J Sedlazeck, Kaspar D Hansen, Jared T Simpson, Winston Timp
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing. Nature methods 17 (12) (2020)
Leslie Myint, Dimitrios G Avramopoulos, Loyal A Goff, Kaspar D Hansen
Linear models enable powerful differential activity analysis in massively parallel reporter assays. BMC genomics 20 (1) (2019)
Lindsay F Rizzardi, Peter F Hickey, Varenka Rodriguez DiBlasi, Rakel Tryggvadóttir, Colin M Callahan, Adrian Idrizi, Kaspar D Hansen, Andrew P Feinberg
Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability. Nature neuroscience 22 (2) (2019)
Leandros Boukas, James M Havrilla, Peter F Hickey, Aaron R Quinlan, Hans Tomas Bjornsson, Kaspar D Hansen
Coexpression patterns define epigenetic regulators associated with neurological dysfunction. Genome research 29 (4) (2019)
Leonardo Collado-Torres, Abhinav Nellore, Kai Kammers, Shannon E Ellis, Margaret A Taub, Kaspar D Hansen, Andrew E Jaffe, Ben Langmead, Jeffrey T Leek
Reproducible RNA-seq analysis using recount2. Nature biotechnology 35 (4) (2018)
Shijie C Zheng, Stephan Beck, Andrew E Jaffe, Devin C Koestler, Kaspar D Hansen, Andres E Houseman, Rafael A Irizarry, Andrew E Teschendorff
Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses. Nature methods 14 (3) (2018)
Leslie Myint, Andre Kleensang, Liang Zhao, Thomas Hartung, Kaspar D Hansen
Joint Bounding of Peaks Across Samples Improves Differential Analysis in Mass Spectrometry-Based Metabolomics. Analytical chemistry 89 (6) (2017)

Kaspar D Hansen.css-eqlu8i{font-size:small;padding-left:4px;} (Kasper D Hansen)

Publication Activity (10 Years)

Top Topics

Top Venues

Kaspar D Hansen (Kasper D Hansen)