pyInfinityFlow: optimized imputation and analysis of high-dimensional flow cytometry data for millions of cells.

Kyle Ferchen Nathan Salomonis H Leighton Grimes

Published in: Bioinformatics (Oxford, England) (2023)

pyInfinityFlow is freely available in GitHub (https://github.com/KyleFerchen/pyInfinityFlow) and on PyPI (https://pypi.org/project/pyInfinityFlow/). Package documentation with tutorials on a test dataset is available by Read the Docs (pyinfinityflow.readthedocs.io). The scripts and data for reproducing the results are available at https://github.com/KyleFerchen/pyInfinityFlow/tree/main/analysis_scripts, along with the raw flow cytometry input data.

Keyphrases

flow cytometry
electronic health record
big data
induced apoptosis
quality improvement
signaling pathway
cell death
advance care planning