Functional Characterization of the Cystine-Rich-Receptor-like Kinases ( CRKs ) and Their Expression Response to Sclerotinia sclerotiorum and Abiotic Stresses in Brassica napus .
Rehman SarwarLei LiJiang YuYijie ZhangRui GengQingfeng MengKeming ZhuXiao-Li TanPublished in: International journal of molecular sciences (2022)
Cysteine-rich receptor-like kinases ( CRKs ) are transmembrane proteins that bind to the calcium ion to regulate stress-signaling and plant development-related pathways, as indicated by several pieces of evidence. However, the CRK gene family hasn't been inadequately examined in Brassica napus . In our study, 27 members of the CRK gene family were identified in Brassica napus , which are categorized into three phylogenetic groups and display synteny relationship to the Arabidopsis thaliana orthologs. All the CRK genes contain highly conserved N-terminal PKINASE domain; however, the distribution of motifs and gene structure were variable conserved. The functional divergence analysis between BnaCRK groups indicates a shift in evolutionary rate after duplication events, demonstrating that BnaCRKs might direct a specific function. RNA-Seq datasets and quantitative real-time PCR (qRT-PCR) exhibit the complex expression profile of the BnaCRKs in plant tissues under multiple stresses. Nevertheless, BnaA06CRK6-1 and BnaA08CRK8 from group B were perceived to play a predominant role in the Brassica napus stress signaling pathway in response to drought, salinity, and Sclerotinia sclerotiorum infection. Insights gained from this study improve our knowledge about the Brassica napus CRK gene family and provide a basis for enhancing the quality of rapeseed.
Keyphrases
- arabidopsis thaliana
- genome wide identification
- rna seq
- transcription factor
- genome wide analysis
- signaling pathway
- single cell
- genome wide
- real time pcr
- healthcare
- poor prognosis
- depressive symptoms
- gene expression
- high resolution
- climate change
- microbial community
- physical activity
- mental health
- binding protein
- social support
- dna methylation
- quality improvement
- protein kinase