Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift.
Elisabetta CameroniChristian SalibaJohn E BowenLaura E RosenKatja CulapDora PintoLaura A VanBlarganAnna De MarcoSamantha K ZepedaJulia di IulioFabrizia ZattaHannah KaiserJulia NoackNisar FarhatNadine CzudnochowskiColin Havenar-DaughtonKaitlin R SprouseJosh R DillenAbigail E PowellAlex ChenCyrus MaherLi YinDavid SunLeah B SoriagaJessica BassiChiara Silacci-FregniClaes GustafssonNicholas M FrankoJenni LogueNajeeha Talat IqbalIgnacio MazzitelliJorge GeffnerRenata GrifantiniHelen ChuAndrea GoriAgostino RivaOlivier GianniniAlessandro CeschiPaolo FerrariPietro CippàAlessandra Franzetti PellandaChristian GarzoniPeter J HalfmannYoshihiro KawaokaChristy HebnerLisa A PurcellLuca PiccoliMatteo Samuele PizzutoAlexandra C WallsMichael S DiamondAmalio TelentiHerbert W VirginAntonio LanzavecchiaDavid J VeeslerGyorgy SnellDavide CortiPublished in: bioRxiv : the preprint server for biology (2021)
The recently emerged SARS-CoV-2 Omicron variant harbors 37 amino acid substitutions in the spike (S) protein, 15 of which are in the receptor-binding domain (RBD), thereby raising concerns about the effectiveness of available vaccines and antibody therapeutics. Here, we show that the Omicron RBD binds to human ACE2 with enhanced affinity relative to the Wuhan-Hu-1 RBD and acquires binding to mouse ACE2. Severe reductions of plasma neutralizing activity were observed against Omicron compared to the ancestral pseudovirus for vaccinated and convalescent individuals. Most (26 out of 29) receptor-binding motif (RBM)-directed monoclonal antibodies (mAbs) lost in vitro neutralizing activity against Omicron, with only three mAbs, including the ACE2-mimicking S2K146 mAb 1 , retaining unaltered potency. Furthermore, a fraction of broadly neutralizing sarbecovirus mAbs recognizing antigenic sites outside the RBM, including sotrovimab 2 , S2X259 3 and S2H97 4 , neutralized Omicron. The magnitude of Omicron-mediated immune evasion and the acquisition of binding to mouse ACE2 mark a major SARS-CoV-2 mutational shift. Broadly neutralizing sarbecovirus mAbs recognizing epitopes conserved among SARS-CoV-2 variants and other sarbecoviruses may prove key to controlling the ongoing pandemic and future zoonotic spillovers.
Keyphrases
- sars cov
- dengue virus
- angiotensin converting enzyme
- respiratory syndrome coronavirus
- angiotensin ii
- amino acid
- binding protein
- endothelial cells
- randomized controlled trial
- coronavirus disease
- systematic review
- small molecule
- transcription factor
- dna binding
- gene expression
- current status
- aedes aegypti
- protein protein
- copy number
- dna methylation
- pluripotent stem cells
- mass spectrometry