Comparison of gene set scoring methods for reproducible evaluation of multiple tuberculosis gene signatures.
Xutao WangArthur VanValkenbergAubrey R Odom-MaybeJerrold J EllnerNatasha S HochbergPadmini SalgamePrasad PatilWilliam Evan JohnsonPublished in: bioRxiv : the preprint server for biology (2023)
Gene set enrichment scoring of existing blood-based biomarker gene sets can distinguish patients with active TB disease from latent TB infection and other clinical conditions with equivalent or improved accuracy compared to the original methods and models. These data justify using gene set scoring methods of published TB gene signatures for predicting TB risk and treatment outcomes, especially when original models are difficult to apply or implement.