William Evan Johnson (W Evan Johnson)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 18

Top Topics

Respiratory Syncytial Virus

Quality Control

Top Venues

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

BMC bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Kiloni R Quiles, Feng-Zhi Shao, William Evan Johnson, Felicia Chen
EPITHELIAL REMODELING AND MICROBIAL DYSBIOSIS IN THE LOWER RESPIRATORY TRACT OF VITAMIN A-DEFICIENT MOUSE LUNGS. bioRxiv : the preprint server for biology (2024)
Kiloni R Quiles, Felicia Chen, William Evan Johnson
EPITHELIAL REMODELING AND MICROBIAL DYSBIOSIS IN THE LOWER RESPIRATORY TRACT OF VITAMIN A-DEFICIENT MOUSE LUNGS. bioRxiv : the preprint server for biology (2024)
Dakota Y Hawkins, Daniel T Zuch, James Huth, Nahomie Rodriguez-Sastre, Kelley R McCutcheon, Abigail Glick, Alexandra T Lion, Christopher F Thomas, Abigail E Descoteaux, William Evan Johnson, Cynthia A Bradham
ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes. Bioinformatics (Oxford, England) 39 (5) (2023)
Dakota Y Hawkins, Daniel T Zuch, James Huth, Nahomie Rodriguez-Sastre, Kelley R McCutcheon, Abigail Glick, Alexandra T Lion, Christopher F Thomas, Abigail E Descoteaux, William Evan Johnson, Cynthia A Bradham
ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes. Bioinformatics (Oxford, England) 39 (5) (2023)
Dakota Y Hawkins, Daniel T Zuch, James Huth, Nahomie Rodriguez-Sastre, Kelley R McCutcheon, Abigail Glick, Alexandra T Lion, Christopher F Thomas, Abigail E Descoteaux, William Evan Johnson, Cynthia A Bradham
ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes. Bioinformatics (Oxford, England) 39 (5) (2023)
Xutao Wang, Arthur VanValkenberg, Aubrey R Odom-Maybe, Jerrold J Ellner, Natasha S Hochberg, Padmini Salgame, Prasad Patil, William Evan Johnson
Comparison of gene set scoring methods for reproducible evaluation of multiple tuberculosis gene signatures. bioRxiv : the preprint server for biology (2023)
Aubrey R Odom-Maybe, Jessica McClintock, Christopher J Gill, Rachel C Pieciak, Arshad Ismail, William B MacLeod, William Evan Johnson, Rotem Lapidot
Analysis of nasopharyngeal microbiome patterns in Zambian infants with fatal acute febrile illness. bioRxiv : the preprint server for biology (2023)
Xutao Wang, Arthur VanValkenberg, Aubrey R Odom-Maybe, Jerrold J Ellner, Natasha S Hochberg, Padmini Salgame, Prasad Patil, William Evan Johnson
Comparison of gene set scoring methods for reproducible evaluation of multiple tuberculosis gene signatures. bioRxiv : the preprint server for biology (2023)
Xutao Wang, Arthur VanValkenberg, Aubrey R Odom-Maybe, Jerrold J Ellner, Natasha S Hochberg, Padmini Salgame, Prasad Patil, William Evan Johnson
Comparison of gene set scoring methods for reproducible evaluation of multiple tuberculosis gene signatures. bioRxiv : the preprint server for biology (2023)
Rui Hong, Yusuke Koga, Shruthi Bandyadka, Anastasia Leshchyk, Yichen Wang, Vidya Akavoor, Xinyun Cao, Irzam Sarfraz, Zhe Wang, Salam Alabdullatif, Frederick Jansen, Masanao Yajima, William Evan Johnson, Joshua D Campbell
Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data. Nature communications 13 (1) (2022)
Yuqing Zhang, Prasad Patil, William Evan Johnson, Giovanni Parmigiani
Robustifying genomic classifiers to batch effects via ensemble learning. Bioinformatics (Oxford, England) 37 (11) (2021)
Jean-Christophe Delpech, Dhruba Pathak, Merina Varghese, Srinidhi Venkatesan Kalavai, Emma C Hays, Patrick R Hof, William Evan Johnson, Seiko Ikezu, Maria Medalla, Jennifer I Luebke, Tsuneya Ikezu
Wolframin-1-expressing neurons in the entorhinal cortex propagate tau to CA1 neurons and impair hippocampal memory in mice. Science translational medicine 13 (611) (2021)
Yue Zhao, Anthony Federico, Tyler Faits, Solaiappan Manimaran, Daniel Segrè, Stefano Monti, William Evan Johnson
animalcules: interactive microbiome analytics and visualization in R. Microbiome 9 (1) (2021)
William Evan Johnson, Aubrey Odom, Chelsie Cintron, Mutharaj Muthaiah, Selby Knudsen, Noyal Joseph, Senbagavalli Babu, Subitha Lakshminarayanan, David F Jenkins, Yue Zhao, Ethel Nankya, C Robert Horsburgh, Gautam Roy, Jerrold Ellner, Sonali Sarkar, Padmini Salgame, Natasha S Hochberg
Comparing tuberculosis gene signatures in malnourished individuals using the TBSignatureProfiler. BMC infectious diseases 21 (1) (2021)
Molly R Braun, Sarah L Noton, Emmeline L Blanchard, Afzaal M Shareef, Philip J Santangelo, William Evan Johnson, Rachel Fearns
Respiratory syncytial virus M2-1 protein associates non-specifically with viral messenger RNA and with specific cellular messenger RNA transcripts. PLoS pathogens 17 (5) (2021)
Yuqing Zhang, Giovanni Parmigiani, William Evan Johnson
ComBat-seq: batch effect adjustment for RNA-seq count data. NAR genomics and bioinformatics 2 (3) (2020)
Maura E Walker, Nirupa R Matthan, Stefania Lamon-Fava, Gloria Solano-Aguilar, Saebyeol Jang, Sukla Lakshman, Aleksey Molokin, Joseph F Urban, Tyler Faits, William Evan Johnson, Alice H Lichtenstein
A Western-Type Dietary Pattern Induces an Atherogenic Gene Expression Profile in the Coronary Arteries of the Ossabaw Pig. Current developments in nutrition 3 (5) (2019)
Yuqing Zhang, David F Jenkins, Solaiappan Manimaran, William Evan Johnson
Alternative empirical Bayes models for adjusting for batch effects in genomic studies. BMC bioinformatics 19 (1) (2018)