Systematic Analysis of a Pyroptosis-Related Signature to Predict the Prognosis and Immune Microenvironment of Lower-Grade Glioma.
Yongze HeYuxiang CaiJinsheng LiuHaixia DingXiang LiSufang TianZhi-Qiang LiPublished in: Cells (2022)
Current treatments for lower-grade glioma (LGG) do not effectively improve life expectancy rates, and this is a major global health concern. Improving our knowledge of this disease will ultimately help to improve prevention, accurate prognosis, and treatment strategies. Pyroptosis is an inflammatory form of regulated cell death, which plays an important role in tumor progression and occurrence. There is still a lack of effective markers to evaluate the prognosis of LGG patients. We collected paraffin-embedded tissue samples and prognostic information from 85 patients with low-grade gliomas and fabricated them into a tissue microarray. Combining data from public databases, we explored the relationship between pyroptosis-related genes (PRGs) and the prognoses of patients with LGG and investigated their correlations with the tumor microenvironment (TME) by means of machine learning, single-cell, immunohistochemical, nomogram, GSEA, and Cox regression analyses. We developed a six-gene PRG-based prognostic model, and the results have identified CASP4 as an effective marker for LGG prognosis predictions. Furthermore, the effects on immune cell infiltration may also provide guidance for future immunotherapy strategies.
Keyphrases
- low grade
- high grade
- machine learning
- global health
- cell death
- healthcare
- nlrp inflammasome
- single cell
- end stage renal disease
- big data
- stem cells
- public health
- newly diagnosed
- chronic kidney disease
- risk assessment
- emergency department
- artificial intelligence
- poor prognosis
- oxidative stress
- transcription factor
- prognostic factors
- rna seq
- signaling pathway
- peritoneal dialysis
- dna methylation
- gene expression
- cell proliferation
- high throughput
- atomic force microscopy
- mass spectrometry
- cell cycle arrest
- genome wide identification