Tumor Sidedness and Enriched Gene Groups for Efficacy of First-line Cetuximab Treatment in Metastatic Colorectal Cancer.
Yu SunakawaKaoru MogushiHeinz-Josef LenzWu ZhangAkihito TsujiTakehiro TakahashiTadamichi DendaKen ShimadaMitsugu KochiMasato NakamuraMasahito KotakaYoshihiko SegawaHiroaki TaniokaYuji NegoroMiriana MoranStephanie H AstrowJack HsiangCraig StephensMasashi FujiiWataru IchikawaPublished in: Molecular cancer therapeutics (2018)
Molecular differences in tumor locations may contribute to the sidedness-specific response to cetuximab in metastatic colorectal cancer (mCRC). We investigated genes associated with the response to cetuximab treatment depending on tumor sidedness. Our study included 77 patients with mCRC (13/63, right/left) with KRAS exon 2 wild-type tumors from phase II trials of first-line therapy with cetuximab. Expression levels of 2,551 genes were measured in tissue samples by HTG EdgeSeq Oncology Biomarker Panel. Univariate Cox regression analysis using log2 values of counts per million (CPM) was conducted in each sidedness to assess associations with clinical outcomes, and to define the optimal cut-off point for clinically significant genes. In addition, a gene set enrichment analysis (GSEA) was performed to identify significant gene pathways in each sidedness. Sixty-nine patients were assessable for gene expression data. Overexpression of BECN1 [log2(CPM) ≥ 6.8] was associated with favorable survival, regardless of tumor sidedness. High expression of NOTCH1 [log2(CPM) ≥ 7.5] predicted significantly longer progression-free survival (PFS; median 14.7 vs. 11.1 months, HR 0.43, P = 0.01) and overall survival (OS; median 42.8 vs. 26.5 months, HR 0.35, P = 0.01) in left side but not in right side. The GSEA showed that regulation of DNA replication gene set correlated with favorable survival in the left, whereas the subcellular component and leukocyte migration gene sets were associated with good survival in the right. In conclusion, genes contributing to the efficacy of cetuximab treatment may differ according to the sidedness in mCRC. NOTCH1 may potentially discriminate favorable responders to cetuximab in patients with left-sided tumors.
Keyphrases
- metastatic colorectal cancer
- wild type
- genome wide
- genome wide identification
- free survival
- copy number
- gene expression
- dna methylation
- poor prognosis
- transcription factor
- cell proliferation
- genome wide analysis
- end stage renal disease
- clinical trial
- locally advanced
- palliative care
- randomized controlled trial
- chronic kidney disease
- newly diagnosed
- stem cells
- high resolution
- machine learning
- radiation therapy
- artificial intelligence
- prognostic factors
- big data
- bone marrow