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Federated learning enables big data for rare cancer boundary detection.

Sarthak PatiUjjwal BaidBrandon EdwardsMicah ShellerShih-Han WangG Anthony ReinaPatrick FoleyAlexey GruzdevDeepthi KarkadaChristos DavatzikosChiharu SakoSatyam GhodasaraMichel BilelloSuyash MohanPhillipp VollmuthGianluca BrugnaraChandrakanth Jayachandran PreethaFelix SahmKlaus H Maier-HeinMaximilian ZenkMartin BendszusWolfgang WickEvan CalabreseJeffrey D RudieJavier Villanueva-MeyerSoonmee ChaMadhura IngalhalikarManali JadhavUmang PandeyJitender SainiJohn W GarrettMatthew LarsonRobert JerajStuart CurrieRussell FroodKavi FataniaRaymond Y HuangKen ChangCarmen Balaña QuinteroJaume CapelladesJosep PuigJohannes TrenklerJosef PichlerGeorg NeckerAndreas HaunschmidtStephan MeckelGaurav ShuklaSpencer LiemGregory S AlexanderJoseph LombardoJoshua David PalmerAdam E FlandersAdam P DickerHaris I SairCraig K JonesArchana VenkataramanMeirui JiangTiffany Y SoCheng ChenPheng Ann HengQi DouMichal KozubekFilip LuxJan MichálekPetr MatulaMiloš KeřkovskýTereza KopřivováMarek DostálVáclav VybíhalMichael A VogelbaumJ Ross MitchellJoaquim M FarinhasJoseph A MaldjianChandan Ganesh Bangalore YoganandaMarco C PinhoDivya ReddyJames HolcombBenjamin C WagnerBenjamin M EllingsonTimothy F CloughesyCatalina RaymondTalia OughourlianAkifumi HagiwaraChencai WangMinh-Son ToSargam BhardwajChee ChongMarc AgzarianAlexandre Xavier FalcãoSamuel B MartinsBernardo Corrêa de Almeida TeixeiraFlavia SprengerDavid MenottiDiego R LucioPamela LaMontagneDaniel MarcusBenedikt WiestlerFlorian KoflerIvan EzhovMarie-Christin MetzRajan JainMatthew D LeeYvonne W LuiRichard McKinleyJohannes SlotboomPiotr RadojewskiRaphael MeierRoland WiestDerrick MurciaEric FuRourke HaasJohn ThompsonDavid Ryan OrmondChaitra BadveAndrew E SloanVachan VadmalKristin A WaiteRivka R ColenLinmin PeiMurat AkAshok SrinivasanRajiv Jayapalli BapurajArvind RaoNicholas C WangOta YoshiakiToshio MoritaniSevcan TurkJoonsang LeeSnehal PrabhudesaiFanny E MorónJacob J MandelKonstantinos KamnitsasBen GlockerLuke V M DixonMatthew WilliamsPetros ZampakisVasileios PanagiotopoulosPanagiotis TsiganosSotiris AlexiouIlias HaliassosEvangelia I ZacharakiKonstantinos MoustakasChristina KalogeropoulouDimitrios M KardamakisYoon Seong ChoiSeung-Koo LeeJong Hee ChangSung Soo AhnBing LuoLaila M PoissonNing Winston WenPallavi TiwariRuchika VermaRohan BarejaIpsa YadavJonathan ChenNeeraj KumarMarion SmitsSebastian R van der VoortAhmed AlafandiFatih IncekaraMaarten M J WijnengaGeorgios KapsasRenske GahrmannJoost W SchoutenHendrikus Jan DubbinkArnaud J P E VincentMartin J Van Den BentPim J FrenchStefan KleinYading YuanSonam SharmaTzu-Chi TsengSaba AdabiSimone P NiclouOlivier KeunenAnn-Christin HauMartin VallièresDavid FortinMartin LepageBennett A LandmanKarthik RamadassKaiwen XuSilky ChotaiLola B ChamblessAkshitkumar MistryReid C ThompsonYuriy GusevKrithika BhuvaneshwarAnousheh SayahCamelia BencheqrounAnas BeloualiSubha MadhavanThomas C BoothAlysha ChelliahMarc ModatHaris ShuaibCarmen DragosAly AbayazeedKenneth KolodziejMichael HillAhmed AbbassyShady GamalMahmoud MekhaimarMohamed QayatiMauricio ReyesJi Eun ParkJihye YunHo Sung KimAbhishek MahajanMark MuziSean BensonRegina G H Beets-TanJonas TeuwenAlejandro HerreraMaria TrujilloWilliam EscobarAna AbelloJose BernalJhon GómezJoseph ChoiStephen S BaekYusung KimHeba IsmaelBryan G AllenJohn M BuattiAikaterini KotrotsouHongwei LiTobias WeissMichael WellerAndrea BinkBertrand PouymayouHassan F ShaykhJoseph SaltzPrateek PrasannaSampurna ShresthaKartik M ManiDavid L PayneTahsin KurcEnrique PelaezHeydy Franco-MaldonadoFrancis LoayzaSebastian QuevedoPamela GuevaraEsteban TorcheCristobal MendozaFranco VeraElvis RíosEduardo LópezSergio A VelastinGodwin OgboleMayowa SoneyeDotun OyekunleOlubunmi Odafe-OyibothaBabatunde OsobuMustapha Shu'aibuAdeleye DorcasFarouk DakoAmber L SimpsonMohammad HamghalamJacob J PeoplesRicky HuAnh TranDanielle CutlerFabio Ynoe de MoraesMichael A BossJames GimpelDeepak Kattil VeettilKendall SchmidtBrian BialeckiSailaja MarellaCynthia PriceLisa CiminoCharles ApgarPrashant ShahBjoern MenzeJill S Barnholtz-SloanJason MartinSpyridon Bakas
Published in: Nature communications (2022)
Although machine learning (ML) has shown promise across disciplines, out-of-sample generalizability is concerning. This is currently addressed by sharing multi-site data, but such centralization is challenging/infeasible to scale due to various limitations. Federated ML (FL) provides an alternative paradigm for accurate and generalizable ML, by only sharing numerical model updates. Here we present the largest FL study to-date, involving data from 71 sites across 6 continents, to generate an automatic tumor boundary detector for the rare disease of glioblastoma, reporting the largest such dataset in the literature (n = 6, 314). We demonstrate a 33% delineation improvement for the surgically targetable tumor, and 23% for the complete tumor extent, over a publicly trained model. We anticipate our study to: 1) enable more healthcare studies informed by large diverse data, ensuring meaningful results for rare diseases and underrepresented populations, 2) facilitate further analyses for glioblastoma by releasing our consensus model, and 3) demonstrate the FL effectiveness at such scale and task-complexity as a paradigm shift for multi-site collaborations, alleviating the need for data-sharing.
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