Login / Signup

A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.

Emiley A Eloe-FadroshChristopher John MungallMark Andrew MillerMontana L SmithSujay Sanjeev PatilJulia M KelliherLeah Y D JohnsonFrancisca E RodriguezPatrick S G ChainBin HuMichael B ThorntonLee Ann McCueAlice Carolyn McHardyNomi L HarrisT B K ReddySupratim MukherjeeChristopher I HunterRamona L WallsLynn M Schriml
Published in: Methods in molecular biology (Clifton, N.J.) (2024)
Comparative analysis of (meta)genomes necessitates aggregation, integration, and synthesis of well-annotated data using standards. The Genomic Standards Consortium (GSC) collaborates with the research community to develop and maintain the Minimum Information about any (x) Sequence (MIxS) reporting standard for genomic data. To facilitate the use of the GSC's MIxS reporting standard, we provide a description of the structure and terminology, how to navigate ontologies for required terms in MIxS, and demonstrate practical usage through a soil metagenome example.
Keyphrases
  • adverse drug
  • electronic health record
  • copy number
  • big data
  • healthcare
  • mental health
  • single cell
  • emergency department
  • machine learning
  • gene expression
  • dna methylation
  • data analysis
  • genome wide
  • deep learning