Christopher John Mungall (Chris Mungall, Christopher Mungall, Christopher J Mungall)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 38

Top Venues

medRxiv : the preprint server for health sciences

bioRxiv : the preprint server for biology

Briefings in bioinformatics

Database : the journal of biological databases and curation

Lawrence Berkeley National Laboratory

University of Edinburgh School of Biological Sciences (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Lawrence Berkeley National Laboratory

United States

Research Scientist :: Molecular Ecosystems Biology

Education History

University of Edinburgh School of Biological Sciences

United Kingdom

PHD

University of Edinburgh

United Kingdom

BSC :: Artificial Intelligence and Computer Science

Publications

Justin T Reese, Leonardo Chimirri, Daniel Danis, J Harry Caufield, Kyran Wissink, Elena Casiraghi, Giorgio Valentini, Melissa A Haendel, Christopher John Mungall, Peter Nick Robinson
Evaluation of the Diagnostic Accuracy of GPT-4 in Five Thousand Rare Disease Cases. medRxiv : the preprint server for health sciences (2024)
Justin T Reese, Leonardo Chimirri, Daniel Danis, J Harry Caufield, Kyran Wissink, Elena Casiraghi, Giorgio Valentini, Melissa A Haendel, Christopher John Mungall, Peter Nick Robinson
Evaluation of the Diagnostic Accuracy of GPT-4 in Five Thousand Rare Disease Cases. medRxiv : the preprint server for health sciences (2024)
J Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L Harris, Marcin P Joachimiak, Nicolas A Matentzoglu, HyeongSik Kim, Sierra A T Moxon, Justin T Reese, Melissa A Haendel, Peter Nick Robinson, Christopher John Mungall
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinformatics (Oxford, England) 40 (3) (2024)
Luca Cappelletti, Lauren Rekerle, Tommaso Fontana, Peter Hansen, Elena Casiraghi, Vida Ravanmehr, Christopher John Mungall, Jeremy J Yang, Leonard Spranger, Guy Karlebach, J Harry Caufield, Leigh C Carmody, Ben Coleman, Tudor I Oprea, Justin T Reese, Giorgio Valentini, Peter Nick Robinson
Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning. Bioinformatics advances 4 (1) (2024)
Yasemin Bridges, Vinícius De Souza, Katherina G Cortes, Melissa A Haendel, Nomi L Harris, Daniel R Korn, Nikolaos M Marinakis, Nicolas A Matentzoglu, James Alastair McLaughlin, Christopher John Mungall, David Osumi-Sutherland, Peter Nick Robinson, Damian Smedley, Julius O B Jacobsen
Towards a standard benchmark for variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework. bioRxiv : the preprint server for biology (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings in bioinformatics 25 (3) (2024)
Yasemin Bridges, Vinícius De Souza, Katherina G Cortes, Melissa A Haendel, Nomi L Harris, Daniel R Korn, Nikolaos M Marinakis, Nicolas A Matentzoglu, James Alastair McLaughlin, Christopher John Mungall, David Osumi-Sutherland, Peter Nick Robinson, Damian Smedley, Julius O B Jacobsen
Towards a standard benchmark for variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework. bioRxiv : the preprint server for biology (2024)
Luca Cappelletti, Lauren Rekerle, Tommaso Fontana, Peter Hansen, Elena Casiraghi, Vida Ravanmehr, Christopher John Mungall, Jeremy J Yang, Leonard Spranger, Guy Karlebach, J Harry Caufield, Leigh C Carmody, Ben Coleman, Tudor I Oprea, Justin T Reese, Giorgio Valentini, Peter Nick Robinson
Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning. Bioinformatics advances 4 (1) (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings in bioinformatics 25 (3) (2024)
J Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L Harris, Marcin P Joachimiak, Nicolas A Matentzoglu, HyeongSik Kim, Sierra A T Moxon, Justin T Reese, Melissa A Haendel, Peter Nick Robinson, Christopher John Mungall
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinformatics (Oxford, England) 40 (3) (2024)
Daniel Danis, Michael J Bamshad, Yasemin Bridges, Pilar Cacheiro, Leigh C Carmody, Jessica Xiao-Ling Chong, Ben Coleman, Raymond Dalgleish, Peter J Freeman, Adam S L Graefe, Tudor Groza, Julius O B Jacobsen, Adam Klocperk, Maaike A A Kusters, Markus S Ladewig, Anthony J Marcello, Teresa Mattina, Christopher John Mungall, Monica C Munoz-Torres, Justin T Reese, Filip Rehburg, Bárbara C S Reis, Catharina Schuetz, Damian Smedley, Timmy Strauß, Jagadish Chandrabose Sundaramurthi, Sylvia Thun, Kyran Wissink, John F Wagstaff, David Zocche, Melissa A Haendel, Peter Nick Robinson
A corpus of GA4GH Phenopackets: case-level phenotyping for genomic diagnostics and discovery. medRxiv : the preprint server for health sciences (2024)
Daniel Danis, Michael J Bamshad, Yasemin Bridges, Pilar Cacheiro, Leigh C Carmody, Jessica Xiao-Ling Chong, Ben Coleman, Raymond Dalgleish, Peter J Freeman, Adam S L Graefe, Tudor Groza, Julius O B Jacobsen, Adam Klocperk, Maaike A A Kusters, Markus S Ladewig, Anthony J Marcello, Teresa Mattina, Christopher John Mungall, Monica C Munoz-Torres, Justin T Reese, Filip Rehburg, Bárbara C S Reis, Catharina Schuetz, Damian Smedley, Timmy Strauß, Jagadish Chandrabose Sundaramurthi, Sylvia Thun, Kyran Wissink, John F Wagstaff, David Zocche, Melissa A Haendel, Peter Nick Robinson
A corpus of GA4GH Phenopackets: case-level phenotyping for genomic diagnostics and discovery. medRxiv : the preprint server for health sciences (2024)
J Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L Harris, Marcin P Joachimiak, Nicolas A Matentzoglu, HyeongSik Kim, Sierra A T Moxon, Justin T Reese, Melissa A Haendel, Peter Nick Robinson, Christopher John Mungall
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinformatics (Oxford, England) 40 (3) (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings in bioinformatics 25 (3) (2024)
Enock Niyonkuru, J Harry Caufield, Leigh C Carmody, Michael Gargano, Sabrina Toro, Patricia L Whetzel, Hannah Blau, Mauricio Soto Gomez, Elena Casiraghi, Leonardo Chimirri, Justin T Reese, Giorgio Valentini, Melissa A Haendel, Christopher John Mungall, Peter Nick Robinson
Leveraging Generative AI to Accelerate Biocuration of Medical Actions for Rare Disease. medRxiv : the preprint server for health sciences (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings in bioinformatics 25 (3) (2024)
Justin T Reese, Leonardo Chimirri, Daniel Danis, J Harry Caufield, Kyran Wissink, Elena Casiraghi, Giorgio Valentini, Melissa A Haendel, Christopher John Mungall, Peter Nick Robinson
Evaluation of the Diagnostic Accuracy of GPT-4 in Five Thousand Rare Disease Cases. medRxiv : the preprint server for health sciences (2024)
Emiley A Eloe-Fadrosh, Christopher John Mungall, Mark Andrew Miller, Montana L Smith, Sujay Sanjeev Patil, Julia M Kelliher, Leah Y D Johnson, Francisca E Rodriguez, Patrick S G Chain, Bin Hu, Michael B Thornton, Lee Ann McCue, Alice Carolyn McHardy, Nomi L Harris, T B K Reddy, Supratim Mukherjee, Christopher I Hunter, Ramona L Walls, Lynn M Schriml
A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics. Methods in molecular biology (Clifton, N.J.) 2802 (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard. bioRxiv : the preprint server for biology (2023)
Justin T Reese, Daniel Danis, J Harry Caufield, Elena Casiraghi, Giorgio Valentini, Christopher John Mungall, Peter Nick Robinson
On the limitations of large language models in clinical diagnosis. medRxiv : the preprint server for health sciences (2023)
Timothy Putman, Kevin Schaper, Nicolas A Matentzoglu, Vincent P Rubinetti, Faisal S Alquaddoomi, Corey Cox, J Harry Caufield, Glass Elsarboukh, Sarah Gehrke, Harshad Hegde, Justin T Reese, Ian Braun, Richard M Bruskiewich, Luca Cappelletti, Seth J Carbon, Anita R Caron, Lauren E Chan, Christopher G Chute, Katherina G Cortes, Vinícius De Souza, Tommaso Fontana, Nomi L Harris, Emily L Hartley, Eric Hurwitz, Julius O B Jacobsen, Madan Krishnamurthy, Bryan J Laraway, James Alastair McLaughlin, Julie A McMurry, Sierra A T Moxon, Kathleen R Mullen, Shawn T O'Neil, Kent A Shefchek, Ray Stefancsik, Sabrina Toro, Nicole A Vasilevsky, Ramona L Walls, Patricia L Whetzel, David Osumi-Sutherland, Damian Smedley, Peter Nick Robinson, Christopher John Mungall, Melissa A Haendel, Monica C Munoz-Torres
The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species. Nucleic acids research (2023)
Lauren E Chan, Elena Casiraghi, Timothy Putman, Justin T Reese, Quaker E Harmon, Kevin Schaper, Harshad Hedge, Giorgio Valentini, Charles P Schmitt, Allison A Motsinger-Reif, Janet E Hall, Christopher John Mungall, Peter Nick Robinson, Melissa A Haendel
Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests. medRxiv : the preprint server for health sciences (2023)
Ray Stefancsik, James P Balhoff, Meghan A Balk, Robyn L Ball, Susan M Bello, Anita R Caron, Elissa J Chesler, Vinícius De Souza, Sarah Gehrke, Melissa A Haendel, Laura W Harris, Nomi L Harris, Arwa Ibrahim, Sebastian Koehler, Nicolas A Matentzoglu, Julie A McMurry, Christopher John Mungall, Monica C Munoz-Torres, Timothy Putman, Peter Nick Robinson, Damian Smedley, Elliot Sollis, Anne E Thessen, Nicole A Vasilevsky, David O Walton, David Osumi-Sutherland
The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences. bioRxiv : the preprint server for biology (2023)
Leigh C Carmody, Michael A Gargano, Sabrina Toro, Nicole A Vasilevsky, Margaret P Adam, Hannah Blau, Lauren E Chan, David Gomez Andres, Rita Horvath, Megan L Kraus, Markus S Ladewig, David Lewis-Smith, Hanns Lochmüller, Nicolas A Matentzoglu, Monica C Munoz-Torres, Catharina Schuetz, Berthold Seitz, Morgan N Similuk, Teresa N Sparks, Timmy Strauß, Emilia M Swietlik, Rachel Thompson, Xingmin Aaron Zhang, Christopher John Mungall, Melissa A Haendel, Peter Nick Robinson
The Medical Action Ontology: A Tool for Annotating and Analyzing Treatments and Clinical Management of Human Disease. medRxiv : the preprint server for health sciences (2023)
Michael A Gargano, Nicolas A Matentzoglu, Ben Coleman, Eunice B Addo-Lartey, Anna V Anagnostopoulos, Joel Anderton, Paul Avillach, Anita M Bagley, Eduard Bakštein, James P Balhoff, Gareth Baynam, Susan M Bello, Michael Berk, Holli Bertram, Somer L Bishop, Hannah Blau, David F Bodenstein, Pablo Botas, Kaan Boztug, Jolana Čady, Tiffany J Callahan, Rhiannon Cameron, Seth J Carbon, Francisco Castellanos, J Harry Caufield, Lauren E Chan, Christopher G Chute, Jaime Cruz-Rojo, Noemi Dahan-Oliel, Jon Robert Davids, Maud De Dieuleveult, Vinicius de Souza, Bert B A de Vries, Esther de Vries, J Raymond DePaulo, Beata Derfalvi, Ferdinand Dhombres, Claudia Diaz-Byrd, Alexander J M Dingemans, Bruno Donadille, Michael Henri Duyzend, Reem Elfeky, Shahim Essaid, Carolina Fabrizzi, Giovanna Fico, Helen V Firth, Yun Freudenberg-Hua, Janice M Fullerton, Davera L Gabriel, Kimberley C Gilmour, Jessica L Giordano, Fernando S Goes, Rachel Gore Moses, Ian Green, Matthias Griese, Tudor Groza, Weihong Gu, Julia Pazmandi, Benjamin M Gyori, Ada Hamosh, Marc Hanauer, Kateřina Hanušová, Yongqun Oliver He, Harshad Hegde, Ingo Helbig, Kateřina Řehořová, Charles Tapley Hoyt, Shangzhi Huang, Eric Hurwitz, Julius O B Jacobsen, Xiaofeng Jiang, Lisa Joseph, Kamyar Keramatian, Bryan King, Katrin Knoflach, David A Koolen, Megan L Kraus, Carlo Kroll, Maaike A A Kusters, Markus S Ladewig, David Lagorce, Meng-Chuan Lai, Pablo Lapunzina, Bryan Laraway, David Lewis-Smith, Xiarong Li, Caterina Lucano, Marzieh Majd, Mary L Marazita, Victor Martínez-González, Toby H McHenry, Melvin G McInnis, Julie A McMurry, Michaela Zelinová, Caitlin E Millett, Philip B Mitchell, Veronika Moslerová, Kenji Narutomi, Shahrzad Nematollahi, Julián Nevado, Andrew A Nierenberg, Nikola Novák Čajbiková, Michael C Neale, Soichi Ogishima, Daniel Olson, Abigail Ortiz, Harry Pachajoa, Guiomar Perez de Nanclares, Amy T Peters, Timothy Putman, Christina K Rapp, Ana Rath, Justin T Reese, Lauren Rekerle, Angharad M Roberts, Suzy Roy, Stephan J Sanders, Catharina Schuetz, Eva C Schulte, Thomas G Schulze, Martin Schwarz, Katie Scott, Dominik Seelow, Berthold Seitz, Yiping Shen, Morgan N Similuk, Eric S Simon, Balwinder Singh, Damian Smedley, Cynthia L Smith, Jake T Smolinsky, Sarah H Sperry, Elizabeth Stafford, Ray Stefancsik, Robin Steinhaus, Rebecca Strawbridge, Jagadish Chandrabose Sundaramurthi, Polina Talapova, Jair Antonio Tenorio Castaño, Pavel Tesner, Rhys Huw Thomas, Audrey Thurm, Marek Turnovec, Marielle E van Gijn, Nicole A Vasilevsky, Markéta Vlčková, Anita Walden, Kai Wang, Ronald J Wapner, James Simon Ware, Addo A Wiafe, Samuel A Wiafe, Lisa D Wiggins, Andrew E Williams, Chen Wu, Margot Julia Wyrwoll, Hui Xiong, Nefize Yalin, Yasunori Yamamoto, Lakshmi N Yatham, Anastasia K Yocum, Allan H Young, Zafer Yüksel, Peter P Zandi, Andreas Zankl, Ignacio Zarante, Miroslav Zvolský, Sabrina Toro, Leigh C Carmody, Nomi L Harris, Monica C Munoz-Torres, Daniel Danis, Christopher John Mungall, Sebastian Koehler, Melissa A Haendel, Peter Nick Robinson
The Human Phenotype Ontology in 2024: phenotypes around the world. Nucleic acids research (2023)
Karamarie Fecho, Chris Bizon, Tursynay Issabekova, Sierra A T Moxon, Anne E Thessen, Shervin Abdollahi, Sergio E Baranzini, Basazin Belhu, William E Byrd, Lawrence Chung, Andrew B Crouse, Marc P Duby, Stephen S Ferguson, Aleksandra Foksinska, Laura Forero, Jennifer Friedman, Vicki Gardner, Gwênlyn Glusman, Jennifer J Hadlock, Kristina Hanspers, Eugene Hinderer, Charlotte A Hobbs, Gregory Hyde, Sui Huang, David Koslicki, Phillip J Mease, Sandrine Muller, Christopher John Mungall, Stephen A Ramsey, Jared C Roach, Irit R Rubin, Shepherd H Schurman, Anath Shalev, Brett Smith, Karthik Soman, Sarah Stemann, Andrew I Su, Casey Ta, Paul B Watkins, Mark D Williams, Chunlei Wu, Colleen H Xu, null null
An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges. Journal of clinical and translational science 7 (1) (2023)
Ray Stefancsik, James P Balhoff, Meghan A Balk, Robyn L Ball, Susan M Bello, Anita R Caron, Elissa J Chesler, Vinícius De Souza, Sarah Gehrke, Melissa A Haendel, Laura W Harris, Nomi L Harris, Arwa Ibrahim, Sebastian Koehler, Nicolas A Matentzoglu, Julie A McMurry, Christopher John Mungall, Monica C Munoz-Torres, Timothy Putman, Peter Nick Robinson, Damian Smedley, Elliot Sollis, Anne E Thessen, Nicole A Vasilevsky, David O Walton, David Osumi-Sutherland
The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences. bioRxiv : the preprint server for biology (2023)
Rebecca C Jackson, Nicolas A Matentzoglu, James A Overton, Randi Vita, James P Balhoff, Pier Luigi Buttigieg, Seth J Carbon, Mélanie Courtot, Alexander D Diehl, Damion M Dooley, William D Duncan, Nomi L Harris, Melissa A Haendel, Suzanna E Lewis, Darren A Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M Schriml, Barry Smith, Christian J Stoeckert, Nicole A Vasilevsky, Ramona L Walls, Jie Zheng, Christopher John Mungall, Bjoern Peters
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database : the journal of biological databases and curation 2021 (2022)
Deepak R Unni, Sierra A T Moxon, Michael Bada, Matthew Brush, Richard M Bruskiewich, J Harry Caufield, Paul A Clemons, Vlado Dančík, Michel Dumontier, Karamarie Fecho, Gwênlyn Glusman, Jennifer J Hadlock, Nomi L Harris, Arpita Joshi, Timothy Putman, Guangrong Qin, Stephen A Ramsey, Kent A Shefchek, Harold Solbrig, Karthik Soman, Anne E Thessen, Melissa A Haendel, Chris Bizon, Christopher John Mungall, null null
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science. Clinical and translational science 15 (8) (2022)
Nicolas Matentzoglu, James P Balhoff, Susan M Bello, Chris Bizon, Matthew Brush, Tiffany J Callahan, Christopher G Chute, William D Duncan, Chris T A Evelo, Davera Gabriel, John Graybeal, Alasdair Gray, Benjamin M Gyori, Melissa A Haendel, Henriette Harmse, Nomi L Harris, Ian Harrow, Harshad B Hegde, Amelia L Hoyt, Charles T Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Koehler, Thomas Liener, Qinqin Long, James Malone, James A McLaughlin, Julie A McMurry, Sierra Moxon, Monica C Munoz-Torres, David Osumi-Sutherland, James A Overton, Bjoern Peters, Tim Putman, Núria Queralt-Rosinach, Kent Shefchek, Harold Solbrig, Anne E Thessen, Tania Tudorache, Nicole Vasilevsky, Alex H Wagner, Christopher John Mungall
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database : the journal of biological databases and curation 2022 (2022)
Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia Noemi Arighi, Jill Babor, Alex Bateman, Ian K Blaby, Crysten Blaby-Haas, Alan J Bridge, Stephen K Burley, Stacey Cleveland, Lucy J Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M Gyori, Christopher Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria-Jesus Martin, Claire McWhite, Gaurav D Moghe, Paul Monaghan, Anne Morgat, Christopher John Mungall, Darren A Natale, William C Nelson, Seán O'Donoghue, Christine Orengo, Katherine H O'Toole, Predrag Radivojac, Colbie Reed, Richard J Roberts, Dmitri Rodionov, Irina A Rodionova, Jeffrey D Rudolf, Lana Saleh, Gloria M Sheynkman, Francoise Thibaud-Nissen, Paul D Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter R Weigele, Valerie Wood, Elisha M Wood-Charlson, Jin Xu
A roadmap for the functional annotation of protein families: a community perspective. Database : the journal of biological databases and curation 2022 (2022)
Suvarna Nadendla, Rebecca C Jackson, James B Munro, Federica Quaglia, Bálint Mészáros, Dustin Olley, Elizabeth T Hobbs, Stephen M Goralski, Marcus C Chibucos, Christopher John Mungall, Silvio C E Tosatto, Ivan Erill, Michelle G Giglio
ECO: the Evidence and Conclusion Ontology, an update for 2022. Nucleic acids research 50 (D1) (2022)
Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P Balhoff, Seth Carbon, Anita R Caron, William D Duncan, Joe E Flack, Melissa A Haendel, Nomi L Harris, William R Hogan, Charles Tapley Hoyt, Rebecca C Jackson, HyeongSik Kim, Huseyin Kir, Martin Larralde, Julie A McMurry, James A Overton, Bjoern Peters, Clare Pilgrim, Ray Stefancsik, Sofia Mc Robb, Sabrina Toro, Nicole A Vasilevsky, Ramona Walls, Christopher John Mungall, David Osumi-Sutherland
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database : the journal of biological databases and curation 2022 (2022)
Justin T Reese, Ben Coleman, Lauren E Chan, Hannah Blau, Tiffany J Callahan, Luca Cappelletti, Tommaso Fontana, Katie Rebecca Bradwell, Nomi L Harris, Elena Casiraghi, Giorgio Valentini, Guy Karlebach, Rachel R Deer, Julie A McMurry, Melissa A Haendel, Christopher G Chute, Emily Rose Pfaff, Richard A Moffitt, Heidi M Spratt, Jasvinder A Singh, Christopher John Mungall, Andrew E Williams, Peter Nick Robinson
Cyclooxygenase inhibitor use is associated with increased COVID-19 severity. medRxiv : the preprint server for health sciences (2021)
Vida Ravanmehr, Hannah Blau, Luca Cappelletti, Tommaso Fontana, Leigh Carmody, Ben Coleman, Joshy George, Justin Reese, Marcin Joachimiak, Giovanni Bocci, Peter Hansen, Carol J Bult, Jens Rueter, Elena Casiraghi, Giorgio Valentini, Christopher John Mungall, Tudor I Oprea, Peter Nick Robinson
Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer. NAR genomics and bioinformatics 3 (4) (2021)
Paul D Thomas, David P Hill, Huaiyu Mi, David Osumi-Sutherland, Kimberly M Van Auken, Seth J Carbon, James P Balhoff, Laurent-Philippe Albou, Benjamin M Good, Pascale Gaudet, Suzanna E Lewis, Christopher John Mungall
Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems. Nature genetics 51 (10) (2020)
Anne E Thessen, Ramona L Walls, Lars Vogt, Jessica Singer, Robert Warren, Pier Luigi Buttigieg, James P Balhoff, Christopher John Mungall, Deborah L McGuinness, Brian J Stucky, Matthew J Yoder, Melissa A Haendel
Transforming the study of organisms: Phenomic data models and knowledge bases. PLoS computational biology 16 (11) (2020)
Julie A McMurry, Sebastian Koehler, Nicole L Washington, James P Balhoff, Charles D Borromeo, Matthew Brush, Seth J Carbon, Tom Conlin, Nathan A Dunn, Mark Engelstad, Erin D Foster, Jean-Philippe Gourdine, Julius O B Jacobsen, Daniel Keith, Bryan Laraway, Jeremy Nguyen Xuan, Kent Shefchek, Nicole A Vasilevsky, Zhou Yuan, Suzanna E Lewis, Harry Hochheiser, Tudor Groza, Damian Smedley, Peter Nick Robinson, Christopher John Mungall, Melissa A Haendel
Navigating the Phenotype Frontier: The Monarch Initiative. Genetics 203 (4) (2017)

Christopher John Mungall.css-eqlu8i{font-size:small;padding-left:4px;} (Chris Mungall, Christopher Mungall, Christopher J Mungall)

Publication Activity (10 Years)

Top Topics

Top Venues

Christopher John Mungall (Chris Mungall, Christopher Mungall, Christopher J Mungall)