Emiley A Eloe-Fadrosh (Emiley Eloe-Fadrosh)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 58

Top Topics

Arabidopsis Thaliana

Infectious Diseases

Top Venues

Microbiology resource announcements

Scientific data

Nature microbiology

The ISME journal

This page only lists publications with an associated author ORCID identifier.

Publications

Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements (2024)
Alyse A Larkin, Melissa L Brock, Adam J Fagan, Allison R Moreno, Skylar D Gerace, Lauren E Lees, Stacy A Suarez, Emiley A Eloe-Fadrosh, Adam C Martiny
Climate-driven succession in marine microbiome biodiversity and biogeochemical function. Research square (2024)
Alyse A Larkin, Melissa L Brock, Adam J Fagan, Allison R Moreno, Skylar D Gerace, Lauren E Lees, Stacy A Suarez, Emiley A Eloe-Fadrosh, Adam C Martiny
Climate-driven succession in marine microbiome biodiversity and biogeochemical function. Research square (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Christopher W Schadt, Stanton Martin, Alyssa Carrell, Allison Fortner, Dan Hopp, Daniel A Jacobson, Dawn M Klingeman, Brandon Kristy, Jana Phillips, Bryan T Piatkowski, Mark A Miller, Montana L Smith, Sujay Patil, Mark Flynn, Shane Canon, Alicia Clum, Christopher J Mungall, Christa Pennacchio, Benjamin Bowen, Katherine Louie, Trent R Northen, Emiley A Eloe-Fadrosh, Melanie A Mayes, Wellington Muchero, David J Weston, Julie Mitchell, Mitchel J Doktycz
An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments. Scientific data 11 (1) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements (2024)
Christopher W Schadt, Stanton Martin, Alyssa Carrell, Allison Fortner, Dan Hopp, Daniel A Jacobson, Dawn M Klingeman, Brandon Kristy, Jana Phillips, Bryan T Piatkowski, Mark A Miller, Montana L Smith, Sujay Patil, Mark Flynn, Shane Canon, Alicia Clum, Christopher J Mungall, Christa Pennacchio, Benjamin Bowen, Katherine Louie, Trent R Northen, Emiley A Eloe-Fadrosh, Melanie A Mayes, Wellington Muchero, David J Weston, Julie Mitchell, Mitchel J Doktycz
An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments. Scientific data 11 (1) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Kenneth N Timmis, John Edward Hallsworth, Terry J McGenity, Rachel Armstrong, Maria-Francisca Colom, Zeynep Ceren Karahan, Max Chavarría, Patricia Bernal, Eric S Boyd, Juan Luis Ramos, Martin Kaltenpoth, Carla Pruzzo, Gerard Clarke, Purificacion Lopez-Garcia, Michail M Yakimov, Jessamyn I Perlmutter, Chris Greening, Emiley A Eloe-Fadrosh, Willy Verstraete, Olga C Nunes, Oleg R Kotsyurbenko, Pablo Iván Nikel, Paola Scavone, Max M Häggblom, Rob Lavigne, Frédérique Le Roux, James Kenneth Timmis, Victor Parro, Carmen Michán, José Luis García, Arturo Casadevall, Shelley M Payne, Joachim Frey, Omry Koren, James I Prosser, Leo Lahti, Rup Lal, Shailly Anand, Utkarsh Sood, Pierre Offre, Casey C Bryce, Allen Y Mswaka, Joerg Jores, Betül Kaçar, Lars Mathias Blank, Nicole Maaßen, Phillip Byron Pope, Horia Leonard Banciu, Judith P Armitage, Sang Yup Lee, Fengping Wang, Thulani Peter Makhalanyane, Jack A Gilbert, Thomas K Wood, Branka Vasiljevic, Mario Soberón, Zulema Udaondo, Fernando Rojo, Jyoti Prakash Tamang, Tatiana Giraud, Jeanne Ropars, Thaddeus Chukwuemeka Ezeji, Volker Müller, Hirofume Danbara, Beate Averhoff, Angela Sessitsch, Laila Pamela Partida-Martínez, Wei E Huang, Søren Molin, Pilar Junier, Ricardo Amils, Xiao-Lei Wu, Eliora Z Ron, Huseyin Erten, Elaine Cristina Pereira De Martinis, Alexander Rapoport, Maarja Öpik, W Donald R Pokatong, Courtney W Stairs, Mohammad Ali Amoozegar, Jéssica Gil Serna
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society. Microbial biotechnology 17 (5) (2024)
Kenneth N Timmis, John Edward Hallsworth, Terry J McGenity, Rachel Armstrong, Maria-Francisca Colom, Zeynep Ceren Karahan, Max Chavarría, Patricia Bernal, Eric S Boyd, Juan Luis Ramos, Martin Kaltenpoth, Carla Pruzzo, Gerard Clarke, Purificacion Lopez-Garcia, Michail M Yakimov, Jessamyn I Perlmutter, Chris Greening, Emiley A Eloe-Fadrosh, Willy Verstraete, Olga C Nunes, Oleg R Kotsyurbenko, Pablo Iván Nikel, Paola Scavone, Max M Häggblom, Rob Lavigne, Frédérique Le Roux, James Kenneth Timmis, Victor Parro, Carmen Michán, José Luis García, Arturo Casadevall, Shelley M Payne, Joachim Frey, Omry Koren, James I Prosser, Leo Lahti, Rup Lal, Shailly Anand, Utkarsh Sood, Pierre Offre, Casey C Bryce, Allen Y Mswaka, Joerg Jores, Betül Kaçar, Lars Mathias Blank, Nicole Maaßen, Phillip Byron Pope, Horia Leonard Banciu, Judith P Armitage, Sang Yup Lee, Fengping Wang, Thulani Peter Makhalanyane, Jack A Gilbert, Thomas K Wood, Branka Vasiljevic, Mario Soberón, Zulema Udaondo, Fernando Rojo, Jyoti Prakash Tamang, Tatiana Giraud, Jeanne Ropars, Thaddeus Chukwuemeka Ezeji, Volker Müller, Hirofume Danbara, Beate Averhoff, Angela Sessitsch, Laila Pamela Partida-Martínez, Wei E Huang, Søren Molin, Pilar Junier, Ricardo Amils, Xiao-Lei Wu, Eliora Z Ron, Huseyin Erten, Elaine Cristina Pereira De Martinis, Alexander Rapoport, Maarja Öpik, W Donald R Pokatong, Courtney W Stairs, Mohammad Ali Amoozegar, Jéssica Gil Serna
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society. Microbial biotechnology 17 (5) (2024)
Christopher W Schadt, Stanton Martin, Alyssa Carrell, Allison Fortner, Dan Hopp, Daniel A Jacobson, Dawn M Klingeman, Brandon Kristy, Jana Phillips, Bryan T Piatkowski, Mark A Miller, Montana L Smith, Sujay Patil, Mark Flynn, Shane Canon, Alicia Clum, Christopher J Mungall, Christa Pennacchio, Benjamin Bowen, Katherine Louie, Trent R Northen, Emiley A Eloe-Fadrosh, Melanie A Mayes, Wellington Muchero, David J Weston, Julie Mitchell, Mitchel J Doktycz
An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments. Scientific data 11 (1) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Robert Riley, Kurt LaButti, Robert Egan, Patrick Hajek, Supratim Mukherjee, Galina Ovchinnikova, T B K Reddy, Sara Calhoun, Richard D Hayes, Robin R Rohwer, Zhichao Zhou, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Nigel J Mouncey, Tijana Glavina Del Rio, Igor V Grigoriev, Steven Hofmeyr, Leonid Oliker, Katherine Yelick, Karthik Anantharaman, Katherine D McMahon, Tanja Woyke, Emiley A Eloe-Fadrosh
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota. Scientific data 11 (1) (2024)
Alyse A Larkin, Melissa L Brock, Adam J Fagan, Allison R Moreno, Skylar D Gerace, Lauren E Lees, Stacy A Suarez, Emiley A Eloe-Fadrosh, Adam C Martiny
Climate-driven succession in marine microbiome biodiversity and biogeochemical function. Research square (2024)
Christopher W Schadt, Stanton Martin, Alyssa Carrell, Allison Fortner, Dan Hopp, Daniel A Jacobson, Dawn M Klingeman, Brandon Kristy, Jana Phillips, Bryan T Piatkowski, Mark A Miller, Montana L Smith, Sujay Patil, Mark Flynn, Shane Canon, Alicia Clum, Christopher J Mungall, Christa Pennacchio, Benjamin Bowen, Katherine Louie, Trent R Northen, Emiley A Eloe-Fadrosh, Melanie A Mayes, Wellington Muchero, David J Weston, Julie Mitchell, Mitchel J Doktycz
An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments. Scientific data 11 (1) (2024)
Emiley A Eloe-Fadrosh, Christopher John Mungall, Mark Andrew Miller, Montana L Smith, Sujay Sanjeev Patil, Julia M Kelliher, Leah Y D Johnson, Francisca E Rodriguez, Patrick S G Chain, Bin Hu, Michael B Thornton, Lee Ann McCue, Alice Carolyn McHardy, Nomi L Harris, T B K Reddy, Supratim Mukherjee, Christopher I Hunter, Ramona L Walls, Lynn M Schriml
A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics. Methods in molecular biology (Clifton, N.J.) 2802 (2024)
Kenneth N Timmis, John Edward Hallsworth, Terry J McGenity, Rachel Armstrong, Maria-Francisca Colom, Zeynep Ceren Karahan, Max Chavarría, Patricia Bernal, Eric S Boyd, Juan Luis Ramos, Martin Kaltenpoth, Carla Pruzzo, Gerard Clarke, Purificacion Lopez-Garcia, Michail M Yakimov, Jessamyn I Perlmutter, Chris Greening, Emiley A Eloe-Fadrosh, Willy Verstraete, Olga C Nunes, Oleg R Kotsyurbenko, Pablo Iván Nikel, Paola Scavone, Max M Häggblom, Rob Lavigne, Frédérique Le Roux, James Kenneth Timmis, Victor Parro, Carmen Michán, José Luis García, Arturo Casadevall, Shelley M Payne, Joachim Frey, Omry Koren, James I Prosser, Leo Lahti, Rup Lal, Shailly Anand, Utkarsh Sood, Pierre Offre, Casey C Bryce, Allen Y Mswaka, Joerg Jores, Betül Kaçar, Lars Mathias Blank, Nicole Maaßen, Phillip Byron Pope, Horia Leonard Banciu, Judith P Armitage, Sang Yup Lee, Fengping Wang, Thulani Peter Makhalanyane, Jack A Gilbert, Thomas K Wood, Branka Vasiljevic, Mario Soberón, Zulema Udaondo, Fernando Rojo, Jyoti Prakash Tamang, Tatiana Giraud, Jeanne Ropars, Thaddeus Chukwuemeka Ezeji, Volker Müller, Hirofume Danbara, Beate Averhoff, Angela Sessitsch, Laila Pamela Partida-Martínez, Wei E Huang, Søren Molin, Pilar Junier, Ricardo Amils, Xiao-Lei Wu, Eliora Z Ron, Huseyin Erten, Elaine Cristina Pereira De Martinis, Alexander Rapoport, Maarja Öpik, W Donald R Pokatong, Courtney W Stairs, Mohammad Ali Amoozegar, Jéssica Gil Serna
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society. Microbial biotechnology 17 (5) (2024)
Robert Riley, Robert M Bowers, Antonio Pedro Camargo, Ashley Campbell, Rob Egan, Emiley A Eloe-Fadrosh, Brian Foster, Steven Hofmeyr, Marcel Huntemann, Matthew Kellom, Jeffrey A Kimbrel, Leonid Oliker, Katherine Yelick, Jennifer Pett-Ridge, Asaf Salamov, Neha J Varghese, Alicia Clum
Terabase-Scale Coassembly of a Tropical Soil Microbiome. Microbiology spectrum (2023)
Samuel E Barnett, Rob Egan, Brian Foster, Emiley A Eloe-Fadrosh, Daniel H Buckley
Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing. mBio (2023)
Laura N Blum, Daniel R Colman, Emiley A Eloe-Fadrosh, Matthew Kellom, Eric S Boyd, Olga Zhaxybayeva, William D Leavitt
Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH. Environmental microbiology (2023)
Cale O Seymour, Marike Palmer, Eric D Becraft, Ramunas Stepanauskas, Ariel D Friel, Frederik Schulz, Tanja Woyke, Emiley A Eloe-Fadrosh, Dengxun Lai, Jian-Yu Jiao, Zheng-Shuang Hua, Lan Liu, Zheng-Han Lian, Wen-Jun Li, Maria Chuvochina, Brianna K Finley, Benjamin J Koch, Egbert Schwartz, Paul Dijkstra, Duane P Moser, Bruce A Hungate, Brian P Hedlund
Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota. Nature microbiology (2023)
Dariia Vyshenska, Pranav Sampara, Kanwar Singh, Andy Tomatsu, W Berkeley Kauffman, Erin E Nuccio, Steven J Blazewicz, Jennifer Pett-Ridge, Katherine B Louie, Neha Varghese, Matthew Kellom, Alicia Clum, Robert Riley, Simon Roux, Emiley A Eloe-Fadrosh, Ryan M Ziels, Rex R Malmstrom
A standardized quantitative analysis strategy for stable isotope probing metagenomics. mSystems (2023)
Julia M Kelliher, Marisa Rudolph, Pajau Vangay, Arwa Abbas, Mikayla A Borton, Emily R Davenport, Karen W Davenport, Natalia G Erazo, Chloe Herman, Lisa Karstens, Brandon Kocurek, Holly L Lutz, Kevin S Myers, Ingrid Ockert, Francisca E Rodriguez, Camille Santistevan, Jaclyn K Saunders, Montana L Smith, Emily Vogtmann, Amanda Windsor, Elisha M Wood-Charlson, Lou Woodley, Emiley A Eloe-Fadrosh
Cohort-based learning for microbiome research community standards. Nature microbiology (2023)
Antonio Pedro Camargo, Lee Call, Simon Roux, Stephen Nayfach, Marcel Huntemann, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Supratim Mukherjee, T B K Reddy, I-Min A Chen, Natalia N Ivanova, Emiley A Eloe-Fadrosh, Tanja Woyke, David A Baltrus, Salvador Castañeda-Barba, María de Toro, Barbara E Funnell, James P J Hall, Aindrila Mukhopadhyay, Eduardo P C Rocha, Thibault Stalder, Eva M Top, Nikos C Kyrpides
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids research (2023)
Mikayla A Borton, Bridget B McGivern, Kathryn R Willi, Benjamin J Woodcroft, Annika C Mosier, Ted Bambakidis, Derick M Singleton, Filipe Liu, Janaka N Edirisinghe, José P Faria, Ikaia Leleiwi, Rebecca A Daly, Amy E Goldman, Michael J Wilkins, Ed K Hall, Christa Pennacchio, Simon Roux, Emiley A Eloe-Fadrosh, Matthew B Sullivan, Christopher S Henry, Elisha M Wood-Charlson, Matthew R V Ross, Christopher S Miller, Byron C Crump, James C Stegen, Kelly C Wrighton
A functional microbiome catalog crowdsourced from North American rivers. bioRxiv : the preprint server for biology (2023)
James M Tiedje, Mary Ann Bruns, Arturo Casadevall, Craig S Criddle, Emiley A Eloe-Fadrosh, David M Karl, Nguyen K Nguyen, Jizhong Zhou
Microbes and Climate Change: a Research Prospectus for the Future. mBio 13 (3) (2022)
Antonio Pedro Camargo, Stephen Nayfach, I-Min A Chen, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Stephan J Ritter, T B K Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y Neches, Tanja Woyke, Natalia N Ivanova, Emiley A Eloe-Fadrosh, Nikos C Kyrpides, Simon Roux
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. Nucleic acids research (2022)
Bryan T Piatkowski, Dana L Carper, Alyssa A Carrell, I-Min A Chen, Alicia Clum, Chris Daum, Emiley A Eloe-Fadrosh, Daniel Gilbert, Gustaf Granath, Marcel Huntemann, Sara S Jawdy, Ingeborg Jenneken Klarenberg, Joel E Kostka, Nikos C Kyrpides, Travis J Lawrence, Supratim Mukherjee, Mats B Nilsson, Krishnaveni Palaniappan, Dale A Pelletier, Christa Pennacchio, T B K Reddy, Simon Roux, A Jonathan Shaw, Denis Warshan, Tatjana Živković, David J Weston
Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe. Microbiology resource announcements 11 (10) (2022)
Matthew P Ostrowski, Sabina Leanti La Rosa, Benoit J Kunath, Andrew Robertson, Gabriel Vasconcelos Pereira, Live Heldal Hagen, Neha J Varghese, Ling Qiu, Tianming Yao, Gabrielle Flint, James Li, Sean P McDonald, Duna Buttner, Nicholas A Pudlo, Matthew K Schnizlein, Vincent B Young, Harry Brumer, Thomas M Schmidt, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Bruce R Hamaker, Emiley A Eloe-Fadrosh, Ashootosh Tripathi, Phillip Byron Pope, Eric C Martens
Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota. Nature microbiology 7 (4) (2022)
I-Min A Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan J Ritter, Cody Webb, Dongying Wu, Neha J Varghese, T B K Reddy, Supratim Mukherjee, Galina Ovchinnikova, Matt Nolan, Rekha Seshadri, Simon Roux, Axel Visel, Tanja Woyke, Emiley A Eloe-Fadrosh, Nikos C Kyrpides, Natalia N Ivanova
The IMG/M data management and analysis system v.7: content updates and new features. Nucleic acids research (2022)
Maureen Berg, Danielle Goudeau, Charles N Olmsted, Katherine D McMahon, Senay Yitbarek, Jennifer L Thweatt, Donald A Bryant, Emiley A Eloe-Fadrosh, Rex R Malmstrom, Simon Roux
Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. The ISME journal 15 (6) (2021)
Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A Boulton, Kerrie Barry, Bánk Beszteri, Corina P D Brussaard, Alicia Clum, Christopher Daum, Emiley A Eloe-Fadrosh, Allison Fong, Brian Foster, Bryce Foster, Michael Ginzburg, Marcel Huntemann, Natalia N Ivanova, Nikos C Kyrpides, Erika Lindquist, Supratim Mukherjee, Krishnaveni Palaniappan, T B K Reddy, Mariam R Rizkallah, Simon Roux, Klaas Timmermans, Susannah G Tringe, Willem H van de Poll, Neha Varghese, Klaus U Valentin, Timothy M Lenton, Igor V Grigoriev, Richard M Leggett, Vincent Moulton, Thomas Mock
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole. Nature communications 12 (1) (2021)
Robert M Bowers, Stephen Nayfach, Frederik Schulz, Sean P Jungbluth, Ilona A Ruhl, Andriy Sheremet, Janey Lee, Danielle Goudeau, Emiley A Eloe-Fadrosh, Ramunas Stepanauskas, Rex R Malmstrom, Nikos C Kyrpides, Peter F Dunfield, Tanja Woyke
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution. The ISME journal 16 (5) (2021)
Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L Beck, Daniel C Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V Costes, Joan Damerow, William D Duncan, José Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M Galazka, Sean M Gibbons, David Hays, William Judson Hervey, Bin Hu, Bonnie L Hurwitz, Pankaj Jaiswal, Marcin P Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T B K Reddy, Lorna Richardson, Simon Roux, Lynn M Schriml, Justin P Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R Thompson, Ruth E Timme, Jie Zheng, Elisha M Wood-Charlson, Emiley A Eloe-Fadrosh
Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities". mSystems 6 (3) (2021)
Alicia Clum, Marcel Huntemann, Brian Bushnell, Brian Foster, Bryce Foster, Simon Roux, Patrick P Hajek, Neha Varghese, Supratim Mukherjee, T B K Reddy, Chris Daum, Yuko Yoshinaga, Ronan O'Malley, Rekha Seshadri, Nikos C Kyrpides, Emiley A Eloe-Fadrosh, I-Min A Chen, Alex Copeland, Natalia N Ivanova
DOE JGI Metagenome Workflow. mSystems 6 (3) (2021)
Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L Beck, Daniel C Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V Costes, Joan Damerow, William D Duncan, José Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M Galazka, Sean M Gibbons, David Hays, William Judson Hervey, Bin Hu, Bonnie L Hurwitz, Pankaj Jaiswal, Marcin P Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T B K Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R Thompson, Ruth E Timme, Jie Zheng, Elisha M Wood-Charlson, Emiley A Eloe-Fadrosh
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities. mSystems 6 (1) (2021)
Simon Roux, Blair G Paul, Sarah C Bagby, Stephen Nayfach, Michelle A Allen, Graeme Attwood, Ricardo Cavicchioli, Ludmila Chistoserdova, Robert J Gruninger, Steven James Hallam, Maria E Hernandez, Matthias Hess, Wen-Tso Liu, Tim A McAllister, Michelle A OʼMalley, Xuefeng Peng, Virginia I Rich, Scott R Saleska, Emiley A Eloe-Fadrosh
Ecology and molecular targets of hypermutation in the global microbiome. Nature communications 12 (1) (2021)
Briana S Abraham, Deniz Caglayan, Natalie V Carrillo, Matthew C Chapman, Claire T Hagan, Skye T Hansen, Ralph O Jeanty, Alexander A Klimczak, Marcos J Klingler, Thomas P Kutcher, Sydney H Levy, Angel A Millard-Bruzos, Thomas B Moore, David J Prentice, Matthew E Prescott, Richard Roehm, Jordan A Rose, Mulan Yin, Ayumi Hyodo, Kathleen Lail, Christopher Daum, Alicia Clum, Alex Copeland, Rekha Seshadri, Tijana Glavina Del Rio, Emiley A Eloe-Fadrosh, Jonathan B Benskin
Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades. Environmental microbiome 15 (1) (2020)
Lynn M Schriml, Maria Chuvochina, Neil Davies, Emiley A Eloe-Fadrosh, Robert D Finn, Philip Hugenholtz, Christopher I Hunter, Bonnie L Hurwitz, Nikos C Kyrpides, Folker Meyer, Ilene Karsch Mizrachi, Susanna-Assunta Sansone, Granger G Sutton, Scott W Tighe, Ramona L Walls
COVID-19 pandemic reveals the peril of ignoring metadata standards. Scientific data 7 (1) (2020)
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