Briefings in functional genomics

Keyphrases

Publications

2024

Diego A Forero, Diego A Bonilla, Yeimy González-Giraldo, George P Patrinos
An overview of key online resources for human genomics: a powerful and open toolbox for in silico research. Briefings in functional genomics (2024)
Yuanfeng Xu, Fan Yu, Wenrong Feng, Jia Wei, Shengyan Su, Jianlin Li, Guoan Hua, Wenjing Li, Yongkai Tang
Genetic variation mining of the Chinese mitten crab (Eriocheir sinensis) based on transcriptome data from public databases. Briefings in functional genomics (2024)
Han Cheng, Liping Xu, Cangzhi Jia
Characterization of double-stranded RNA and its silencing efficiency for insects using hybrid deep-learning framework. Briefings in functional genomics (2024)
Keerthana Vinod Kumar, Ambuj Kumar, Kavita Kundal, Avik Sengupta, Kunjulakshmi R, Subashani Singh, Bhanu Teja Korra, Simran Sharma, Vandana Suresh, Mayilaadumveettil Nishana, Rahul Kumar
AMLdb: a comprehensive multi-omics platform to identify biomarkers and drug targets for acute myeloid leukemia. Briefings in functional genomics (2024)
Bac Dao, Van Ngu Trinh, Nguyen Van Huy, Hoa Lan Nguyen, Thuc Duy Le, Phuc-Loi Luu
Crosstalk between genomic variants and DNA methylation in FLT3 mutant acute myeloid leukemia. Briefings in functional genomics (2024)
Matheus Sanitá Lima, Douglas Silva Domingues, Alexandre Rossi Paschoal, David Roy Smith
Long-read RNA sequencing can probe organelle genome pervasive transcription. Briefings in functional genomics (2024)
Yidi Sun, Lingling Kong, Jiayi Huang, Hongyan Deng, Xinling Bian, Xingfeng Li, Feifei Cui, Lijun Dou, Chen Cao, Guishen Wang, Zilong Zhang
A comprehensive survey of dimensionality reduction and clustering methods for single-cell and spatial transcriptomics data. Briefings in functional genomics (2024)
Keyu Wan, Tiantian Nie, Wenhao Ouyang, Yunjing Xiong, Jing Bian, Ying Huang, Li Ling, Zhenjun Huang, Xianhua Zhu
Exploring the impact of N4-acetylcytidine modification in RNA on non-neoplastic disease: unveiling its role in pathogenesis and therapeutic opportunities. Briefings in functional genomics (2024)
Zhaolan Du, Yi Shi, Jianjun Tan
Advances in integrating single-cell sequencing data to unravel the mechanism of ferroptosis in cancer. Briefings in functional genomics (2024)
Tapabrata Chakraborti, Subhadip Basu
Editorial for BFG special issue: Computational genomics for precision medicine and personalized healthcare. Briefings in functional genomics (2024)
Deepyaman Das, Soumita Podder
Microscale marvels: unveiling the macroscopic significance of micropeptides in human health. Briefings in functional genomics (2024)
Himanshu Avashthi, Ulavappa Basavanneppa Angadi, Divya Chauhan, Anuj Kumar, Dwijesh Chandra Mishra, Parimalan Rangan, Rashmi Yadav, Dinesh Kumar
Sesame Genomic Web Resource (SesameGWR): a well-annotated data resource for transcriptomic signatures of abiotic and biotic stress responses in sesame (Sesamum indicum L.). Briefings in functional genomics (2024)
Xinrong Jin, Ruohan Zhang, Yunqi Fu, Qiunan Zhu, Liquan Hong, Aiwei Wu, Hu Wang
Unveiling aging dynamics in the hematopoietic system insights from single-cell technologies. Briefings in functional genomics (2024)
Archana Mathur, Nikhilanand Arya, Kitsuchart Pasupa, Sriparna Saha, Sudeepa Roy Dey, Snehanshu Saha
Breast cancer prognosis through the use of multi-modal classifiers: current state of the art and the way forward. Briefings in functional genomics (2024)
Surender Kumar, Anupama Singh, Chander Mohan Singh Bist, Munish Sharma
Advancements in genetic techniques and functional genomics for enhancing crop traits and agricultural sustainability. Briefings in functional genomics (2024)
Maciej Wiśniewski, Peace Babirye, Carol Musubika, Eleni Papakonstantinou, Samuel Kirimunda, Michal Łaźniewski, Teresa Szczepińska, Moses L Joloba, Elias Eliopoulos, Erik Bongcam-Rudloff, Dimitrios Vlachakis, Anup Kumar Halder, Dariusz Plewczyński, Misaki Wayengera
Use of in silico approaches, synthesis and profiling of Pan-filovirus GP-1,2 preprotein specific antibodies. Briefings in functional genomics (2024)
Anupam Banerjee, She Zhang, Ivet Bahar
Genome structural dynamics: insights from Gaussian network analysis of Hi-C data. Briefings in functional genomics (2024)
Debabrata Acharya, Anirban Mukhopadhyay
A comprehensive review of machine learning techniques for multi-omics data integration: challenges and applications in precision oncology. Briefings in functional genomics (2024)
Biyu Diao, Jin Luo, Yu Guo
A comprehensive survey on deep learning-based identification and predicting the interaction mechanism of long non-coding RNAs. Briefings in functional genomics (2024)
Cai-Xia Zhang, Ying-Chun Hou
Short-homology-mediated PCR-based method for gene introduction in the fission yeast Schizosaccharomyces pombe. Briefings in functional genomics (2024)
Changnan Gao, Wenjie Bao, Shuang Wang, Jianyang Zheng, Lulu Wang, Yongqi Ren, Linfang Jiao, Jianmin Wang, Xun Wang
DockingGA: enhancing targeted molecule generation using transformer neural network and genetic algorithm with docking simulation. Briefings in functional genomics (2024)
Hollie Wilkinson, Jamie McDonald, Helen S McCarthy, Jade Perry, Karina Wright, Charlotte Hulme, Paul Cool
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study. Briefings in functional genomics (2024)
Zhecheng Zhou, Zhenya Du, Xin Jiang, Linlin Zhuo, Yixin Xu, Xiangzheng Fu, Mingzhe Liu, Quan Zou
GAM-MDR: probing miRNA-drug resistance using a graph autoencoder based on random path masking. Briefings in functional genomics (2024)
Cristina Moral-Turón, Gualberto Asencio-Cortés, Francesc Rodriguez-Diaz, Alejandro Rubio, Alberto G Navarro, Ana M Brokate-Llanos, Andrés Garzón, Manuel Jesús Muñoz, Antonio J Pérez-Pulido
ASACO: Automatic and Serial Analysis of CO-expression to discover gene modifiers with potential use in drug repurposing. Briefings in functional genomics (2024)
Xiao-Wei Liu, Han-Lin Li, Cai-Yi Ma, Tian-Yu Shi, Tian-Yu Wang, Dan Yan, Hua Tang, Hao Lin, Ke-Jun Deng
Predicting the role of the human gut microbiome in type 1 diabetes using machine-learning methods. Briefings in functional genomics (2024)
Brad Balderson, Mitchell Fane, Tracey J Harvey, Michael Piper, Aaron Smith, Mikael Boden
Systematic analysis of the transcriptional landscape of melanoma reveals drug-target expression plasticity. Briefings in functional genomics (2024)

volume 23, number 3, 2024

Vikram S Gaur, Salej Sood, Carlos Guzmán, Kenneth M Olsen
Molecular insights on the origin and development of waxy genotypes in major crop plants. Briefings in functional genomics 23 (3) (2024)
Vikram S Gaur, Salej Sood, Carlos Guzmán, Kenneth M Olsen
Molecular insights on the origin and development of waxy genotypes in major crop plants. Briefings in functional genomics 23 (3) (2024)

volume 23, number 4, 2024

Qing Jin, Xianze Zhang, Diwei Huo, Hongbo Xie, Denan Zhang, Lei Liu, Yashuang Zhao, Xiujie Chen
Predicting drug synergy using a network propagation inspired machine learning framework. Briefings in functional genomics 23 (4) (2024)
Ren Junjun, Zhang Zhengqian, Wu Ying, Wang Jialiang, Yongzhuang Liu
A comprehensive review of deep learning-based variant calling methods. Briefings in functional genomics 23 (4) (2024)
Monika Khandelwal, Ranjeet Kumar Rout
DeepPRMS: advanced deep learning model to predict protein arginine methylation sites. Briefings in functional genomics 23 (4) (2024)
Zhecheng Zhou, Zhenya Du, Xin Jiang, Linlin Zhuo, Yixin Xu, Xiangzheng Fu, Mingzhe Liu, Quan Zou
GAM-MDR: probing miRNA-drug resistance using a graph autoencoder based on random path masking. Briefings in functional genomics 23 (4) (2024)
Ibrahim Alsaggaf, Daniel Buchan, Cen Wan
Improving cell type identification with Gaussian noise-augmented single-cell RNA-seq contrastive learning. Briefings in functional genomics 23 (4) (2024)
Zhecheng Zhou, Zhenya Du, Xin Jiang, Linlin Zhuo, Yixin Xu, Xiangzheng Fu, Mingzhe Liu, Quan Zou
GAM-MDR: probing miRNA-drug resistance using a graph autoencoder based on random path masking. Briefings in functional genomics 23 (4) (2024)
Hao Cai, Liangbo Chen, Shuxin Yang, Ronghong Jiang, You Guo, Ming He, Yun Luo, Guini Hong, Hongdong Li, Kai Song
Personalized differential expression analysis in triple-negative breast cancer. Briefings in functional genomics 23 (4) (2024)
Biyu Diao, Jin Luo, Yu Guo
A comprehensive survey on deep learning-based identification and predicting the interaction mechanism of long non-coding RNAs. Briefings in functional genomics 23 (4) (2024)
Ren Junjun, Zhang Zhengqian, Wu Ying, Wang Jialiang, Yongzhuang Liu
A comprehensive review of deep learning-based variant calling methods. Briefings in functional genomics 23 (4) (2024)
Chaorui Yan, Yanxu Zhu, Miao Chen, Kainan Yang, Feifei Cui, Guishen Wang, Zilong Zhang
Integration tools for scRNA-seq data and spatial transcriptomics sequencing data. Briefings in functional genomics 23 (4) (2024)
Qing Jin, Xianze Zhang, Diwei Huo, Hongbo Xie, Denan Zhang, Lei Liu, Yashuang Zhao, Xiujie Chen
Predicting drug synergy using a network propagation inspired machine learning framework. Briefings in functional genomics 23 (4) (2024)
Biyu Diao, Jin Luo, Yu Guo
A comprehensive survey on deep learning-based identification and predicting the interaction mechanism of long non-coding RNAs. Briefings in functional genomics 23 (4) (2024)
David Enoma
Genomics in Clinical trials for Breast Cancer. Briefings in functional genomics 23 (4) (2024)
David Enoma
Genomics in Clinical trials for Breast Cancer. Briefings in functional genomics 23 (4) (2024)
Cristina Moral-Turón, Gualberto Asencio-Cortés, Francesc Rodriguez-Diaz, Alejandro Rubio, Alberto G Navarro, Ana M Brokate-Llanos, Andrés Garzón, Manuel Jesús Muñoz, Antonio J Pérez-Pulido
ASACO: Automatic and Serial Analysis of CO-expression to discover gene modifiers with potential use in drug repurposing. Briefings in functional genomics 23 (4) (2024)
Ibrahim Alsaggaf, Daniel Buchan, Cen Wan
Improving cell type identification with Gaussian noise-augmented single-cell RNA-seq contrastive learning. Briefings in functional genomics 23 (4) (2024)
Monika Khandelwal, Ranjeet Kumar Rout
DeepPRMS: advanced deep learning model to predict protein arginine methylation sites. Briefings in functional genomics 23 (4) (2024)
Chaorui Yan, Yanxu Zhu, Miao Chen, Kainan Yang, Feifei Cui, Guishen Wang, Zilong Zhang
Integration tools for scRNA-seq data and spatial transcriptomics sequencing data. Briefings in functional genomics 23 (4) (2024)
Xiao-Wei Liu, Han-Lin Li, Cai-Yi Ma, Tian-Yu Shi, Tian-Yu Wang, Dan Yan, Hua Tang, Hao Lin, Ke-Jun Deng
Predicting the role of the human gut microbiome in type 1 diabetes using machine-learning methods. Briefings in functional genomics 23 (4) (2024)
Hao Cai, Liangbo Chen, Shuxin Yang, Ronghong Jiang, You Guo, Ming He, Yun Luo, Guini Hong, Hongdong Li, Kai Song
Personalized differential expression analysis in triple-negative breast cancer. Briefings in functional genomics 23 (4) (2024)
Cristina Moral-Turón, Gualberto Asencio-Cortés, Francesc Rodriguez-Diaz, Alejandro Rubio, Alberto G Navarro, Ana M Brokate-Llanos, Andrés Garzón, Manuel Jesús Muñoz, Antonio J Pérez-Pulido
ASACO: Automatic and Serial Analysis of CO-expression to discover gene modifiers with potential use in drug repurposing. Briefings in functional genomics 23 (4) (2024)
Xiao-Wei Liu, Han-Lin Li, Cai-Yi Ma, Tian-Yu Shi, Tian-Yu Wang, Dan Yan, Hua Tang, Hao Lin, Ke-Jun Deng
Predicting the role of the human gut microbiome in type 1 diabetes using machine-learning methods. Briefings in functional genomics 23 (4) (2024)