Aakrosh Ratan

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 23

Top Topics

Dna Methylation

Natural Killer Cells

Genome Wide Association Study

Top Venues

bioRxiv : the preprint server for biology

Communications biology

This page only lists publications with an associated author ORCID identifier.

Publications

Connor S Murray, Madison Karram, David J Bass, Madison Doceti, Dörthe Becker, Joaquin C B Nunez, Aakrosh Ratan, Alan O Bergland
Balancing selection and the functional effects of shared polymorphism in cryptic Daphnia species. bioRxiv : the preprint server for biology (2024)
Connor S Murray, Madison Karram, David J Bass, Madison Doceti, Dörthe Becker, Joaquin C B Nunez, Aakrosh Ratan, Alan O Bergland
Balancing selection and the functional effects of shared polymorphism in cryptic Daphnia species. bioRxiv : the preprint server for biology (2024)
Connor S Murray, Madison Karram, David J Bass, Madison Doceti, Dörthe Becker, Joaquin C B Nunez, Aakrosh Ratan, Alan O Bergland
Balancing selection and the functional effects of shared polymorphism in cryptic Daphnia species. bioRxiv : the preprint server for biology (2024)
Connor S Murray, Madison Karram, David J Bass, Madison Doceti, Dörthe Becker, Joaquin C B Nunez, Aakrosh Ratan, Alan O Bergland
Balancing selection and the functional effects of shared polymorphism in cryptic Daphnia species. bioRxiv : the preprint server for biology (2024)
Hie Lim Kim, Tanghua Li, Namrata Kalsi, Hung Tran The Nguyen, Timothy A Shaw, Khai C Ang, Keith C Cheng, Aakrosh Ratan, W Richard Peltier, Dhrubajyoti Samanta, Mahesh Pratapneni, Stephan C Schuster, Benjamin P Horton
Prehistoric human migration between Sundaland and South Asia was driven by sea-level rise. Communications biology 6 (1) (2023)
Goo Jun, Adam C English, Ginger A Metcalf, Jianzhi Yang, Mark J P Chaisson, Nathan Pankratz, Vipin K Menon, William J Salerno, Olga Krasheninina, Albert Vernon Smith, John A Lane, Tom Blackwell, Hyun-Min Kang, Sejal Salvi, Qingchang Meng, Hua Shen, Divya Pasham, Sravya Bhamidipati, Kavya Kottapalli, Donna K Arnett, Allison Elizabeth Ashley-Koch, Paul L Auer, Kathleen M Beutel, Joshua C Bis, John E Blangero, Donald W Bowden, Jennifer A Brody, Brian E Cade, Yii-Der Ida Chen, Michael H Cho, Joanne E Curran, Myriam Fornage, Barry I Freedman, Tasha Fingerlin, Bruce D Gelb, Lifang Hou, Yi-Jen Hung, John P Kane, Robert C Kaplan, Wonji Kim, Ruth J F Loos, Gregory M Marcus, Rasika A Mathias, Stephen T McGarvey, Courtney G Montgomery, Take Naseri, S Mehdi Nouraie, Michael H Preuss, Nicholette D D Allred, Patricia A Peyser, Laura M Raffield, Aakrosh Ratan, Susan Redline, Sefuiva Reupena, Jerome I Rotter, Stephen S Rich, Michiel Rienstra, Ingo Ruczinski, Vijay G Sankaran, David A Schwartz, Christine E Seidman, Jonathan G Seidman, Edwin K Silverman, Jennifer A Smith, Adrienne M Stilp, Kent D Taylor, Marilyn J Telen, Scott T Weiss, L Keoki Williams, Baojun Wu, Lisa R Yanek, Yingze Zhang, Jessica A Lasky-Su, Marie Claude Gingras, Susan K Dutcher, Evan E Eichler, Stacey Gabriel, Soren Germer, Ryan Kim, Karine A Viaud-Martinez, Deborah A Nickerson, null null, James Luo, Alexander P Reiner, Richard A Gibbs, Eric Boerwinkle, Goncalo Abecasis, Fritz J Sedlazeck
Structural variation across 138,134 samples in the TOPMed consortium. bioRxiv : the preprint server for biology (2023)
Islam Eljilany, Payman Ghasemi Saghand, James L Chen, Aakrosh Ratan, Martin D McCarter, John Carpten, Howard Colman, Alexandra P Ikeguchi, Igor Puzanov, Susanne Arnold, Michelle Churchman, Patrick Hwu, Jose Conejo-Garcia, William S Dalton, George J Weiner, Issam El Naqa, Ahmad A Tarhini
The T Cell Immunoscore as a Reference for Biomarker Development Utilizing Real-World Data from Patients with Advanced Malignancies Treated with Immune Checkpoint Inhibitors. Cancers 15 (20) (2023)
Hie Lim Kim, Tanghua Li, Namrata Kalsi, Hung Tran The Nguyen, Timothy A Shaw, Khai C Ang, Keith C Cheng, Aakrosh Ratan, W Richard Peltier, Dhrubajyoti Samanta, Mahesh Pratapneni, Stephan C Schuster, Benjamin P Horton
Prehistoric human migration between Sundaland and South Asia was driven by sea-level rise. Communications biology 6 (1) (2023)
Hie Lim Kim, Tanghua Li, Namrata Kalsi, Hung Tran The Nguyen, Timothy A Shaw, Khai C Ang, Keith C Cheng, Aakrosh Ratan, W Richard Peltier, Dhrubajyoti Samanta, Mahesh Pratapneni, Stephan C Schuster, Benjamin P Horton
Prehistoric human migration between Sundaland and South Asia was driven by sea-level rise. Communications biology 6 (1) (2023)
Goo Jun, Adam C English, Ginger A Metcalf, Jianzhi Yang, Mark J P Chaisson, Nathan Pankratz, Vipin K Menon, William J Salerno, Olga Krasheninina, Albert Vernon Smith, John A Lane, Tom Blackwell, Hyun-Min Kang, Sejal Salvi, Qingchang Meng, Hua Shen, Divya Pasham, Sravya Bhamidipati, Kavya Kottapalli, Donna K Arnett, Allison Elizabeth Ashley-Koch, Paul L Auer, Kathleen M Beutel, Joshua C Bis, John E Blangero, Donald W Bowden, Jennifer A Brody, Brian E Cade, Yii-Der Ida Chen, Michael H Cho, Joanne E Curran, Myriam Fornage, Barry I Freedman, Tasha Fingerlin, Bruce D Gelb, Lifang Hou, Yi-Jen Hung, John P Kane, Robert C Kaplan, Wonji Kim, Ruth J F Loos, Gregory M Marcus, Rasika A Mathias, Stephen T McGarvey, Courtney G Montgomery, Take Naseri, S Mehdi Nouraie, Michael H Preuss, Nicholette D D Allred, Patricia A Peyser, Laura M Raffield, Aakrosh Ratan, Susan Redline, Sefuiva Reupena, Jerome I Rotter, Stephen S Rich, Michiel Rienstra, Ingo Ruczinski, Vijay G Sankaran, David A Schwartz, Christine E Seidman, Jonathan G Seidman, Edwin K Silverman, Jennifer A Smith, Adrienne M Stilp, Kent D Taylor, Marilyn J Telen, Scott T Weiss, L Keoki Williams, Baojun Wu, Lisa R Yanek, Yingze Zhang, Jessica A Lasky-Su, Marie Claude Gingras, Susan K Dutcher, Evan E Eichler, Stacey Gabriel, Soren Germer, Ryan Kim, Karine A Viaud-Martinez, Deborah A Nickerson, null null, James Luo, Alexander P Reiner, Richard A Gibbs, Eric Boerwinkle, Goncalo Abecasis, Fritz J Sedlazeck
Structural variation across 138,134 samples in the TOPMed consortium. bioRxiv : the preprint server for biology (2023)
Hie Lim Kim, Tanghua Li, Namrata Kalsi, Hung Tran The Nguyen, Timothy A Shaw, Khai C Ang, Keith C Cheng, Aakrosh Ratan, W Richard Peltier, Dhrubajyoti Samanta, Mahesh Pratapneni, Stephan C Schuster, Benjamin P Horton
Prehistoric human migration between Sundaland and South Asia was driven by sea-level rise. Communications biology 6 (1) (2023)
Chunsong Yang, Krzysztof Wierbiłowicz, Natalia M Dworak, Song Yi Bae, Sachi B Tengse, Nicki Abianeh, Justin M Drake, Tarek A Abbas, Aakrosh Ratan, David Wotton, Bryce M Paschal
Induction of PARP7 Creates a Vulnerability for Growth Inhibition by RBN2397 in Prostate Cancer Cells. Cancer research communications 3 (4) (2023)
Goo Jun, Adam C English, Ginger A Metcalf, Jianzhi Yang, Mark J P Chaisson, Nathan Pankratz, Vipin K Menon, William J Salerno, Olga Krasheninina, Albert Vernon Smith, John A Lane, Tom Blackwell, Hyun-Min Kang, Sejal Salvi, Qingchang Meng, Hua Shen, Divya Pasham, Sravya Bhamidipati, Kavya Kottapalli, Donna K Arnett, Allison Elizabeth Ashley-Koch, Paul L Auer, Kathleen M Beutel, Joshua C Bis, John E Blangero, Donald W Bowden, Jennifer A Brody, Brian E Cade, Yii-Der Ida Chen, Michael H Cho, Joanne E Curran, Myriam Fornage, Barry I Freedman, Tasha Fingerlin, Bruce D Gelb, Lifang Hou, Yi-Jen Hung, John P Kane, Robert C Kaplan, Wonji Kim, Ruth J F Loos, Gregory M Marcus, Rasika A Mathias, Stephen T McGarvey, Courtney G Montgomery, Take Naseri, S Mehdi Nouraie, Michael H Preuss, Nicholette D D Allred, Patricia A Peyser, Laura M Raffield, Aakrosh Ratan, Susan Redline, Sefuiva Reupena, Jerome I Rotter, Stephen S Rich, Michiel Rienstra, Ingo Ruczinski, Vijay G Sankaran, David A Schwartz, Christine E Seidman, Jonathan G Seidman, Edwin K Silverman, Jennifer A Smith, Adrienne M Stilp, Kent D Taylor, Marilyn J Telen, Scott T Weiss, L Keoki Williams, Baojun Wu, Lisa R Yanek, Yingze Zhang, Jessica A Lasky-Su, Marie Claude Gingras, Susan K Dutcher, Evan E Eichler, Stacey Gabriel, Soren Germer, Ryan Kim, Karine A Viaud-Martinez, Deborah A Nickerson, null null, James Luo, Alexander P Reiner, Richard A Gibbs, Eric Boerwinkle, Goncalo Abecasis, Fritz J Sedlazeck
Structural variation across 138,134 samples in the TOPMed consortium. bioRxiv : the preprint server for biology (2023)
Goo Jun, Adam C English, Ginger A Metcalf, Jianzhi Yang, Mark J P Chaisson, Nathan Pankratz, Vipin K Menon, William J Salerno, Olga Krasheninina, Albert Vernon Smith, John A Lane, Tom Blackwell, Hyun-Min Kang, Sejal Salvi, Qingchang Meng, Hua Shen, Divya Pasham, Sravya Bhamidipati, Kavya Kottapalli, Donna K Arnett, Allison Elizabeth Ashley-Koch, Paul L Auer, Kathleen M Beutel, Joshua C Bis, John E Blangero, Donald W Bowden, Jennifer A Brody, Brian E Cade, Yii-Der Ida Chen, Michael H Cho, Joanne E Curran, Myriam Fornage, Barry I Freedman, Tasha Fingerlin, Bruce D Gelb, Lifang Hou, Yi-Jen Hung, John P Kane, Robert C Kaplan, Wonji Kim, Ruth J F Loos, Gregory M Marcus, Rasika A Mathias, Stephen T McGarvey, Courtney G Montgomery, Take Naseri, S Mehdi Nouraie, Michael H Preuss, Nicholette D D Allred, Patricia A Peyser, Laura M Raffield, Aakrosh Ratan, Susan Redline, Sefuiva Reupena, Jerome I Rotter, Stephen S Rich, Michiel Rienstra, Ingo Ruczinski, Vijay G Sankaran, David A Schwartz, Christine E Seidman, Jonathan G Seidman, Edwin K Silverman, Jennifer A Smith, Adrienne M Stilp, Kent D Taylor, Marilyn J Telen, Scott T Weiss, L Keoki Williams, Baojun Wu, Lisa R Yanek, Yingze Zhang, Jessica A Lasky-Su, Marie Claude Gingras, Susan K Dutcher, Evan E Eichler, Stacey Gabriel, Soren Germer, Ryan Kim, Karine A Viaud-Martinez, Deborah A Nickerson, null null, James Luo, Alexander P Reiner, Richard A Gibbs, Eric Boerwinkle, Goncalo Abecasis, Fritz J Sedlazeck
Structural variation across 138,134 samples in the TOPMed consortium. bioRxiv : the preprint server for biology (2023)
Constance Baer, Shunsuke Kimura, Mitra Shumsher Rana, Andrew B Kleist, Tim Flerlage, Thomas P Loughran, Peter J Chockley, Wencke Walter, Manja Meggendorfer, Thomas L Olson, HeeJin Cheon, Kristine C Olson, Aakrosh Ratan, Martha-Lena Mueller, James M Foran, Laura J Janke, Chunxu Qu, Shaina N Porter, Shondra M Pruett-Miller, Ravi C Kalathur, Claudia Haferlach, Wolfgang Kern, Elisabeth Paietta, Paul Glyndwr Thomas, M Madan Babu, Thomas P Loughran, Ilaria Iacobucci, Torsten Haferlach, Charles G Mullighan
CCL22 mutations drive natural killer cell lymphoproliferative disease by deregulating microenvironmental crosstalk. Nature genetics 54 (5) (2022)
HeeJin Cheon, Jeffrey C Xing, Katharine B Moosic, Johnson Ung, Vivian W Chan, David S Chung, Mariella F Toro, Omar Elghawy, John S Wang, Cait E Hamele, Ross Cameron Hardison, Thomas L Olson, Su-Fern Tan, Thomas P Loughran, Aakrosh Ratan, Thomas P Loughran
Genomic landscape of TCRαβ and TCRγδ T-large granular lymphocyte leukemia. Blood 139 (20) (2022)
Jouni Sirén, Jean Monlong, Xian Chang, Adam M Novak, Jordan M Eizenga, Charles Markello, Jonas A Sibbesen, Glenn Hickey, Pi-Chuan Chang, Andrew Carroll, Namrata Gupta, Stacey Gabriel, Thomas W Blackwell, Aakrosh Ratan, Kent D Taylor, Stephen S Rich, Jerome I Rotter, David Haussler, Erik Garrison, Benedict Paten
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes. Science (New York, N.Y.) 374 (6574) (2021)
Thomas L Olson, HeeJin Cheon, Jeffrey C Xing, Kristine C Olson, Umadevi Paila, Cait E Hamele, Yaseswini Neelamraju, Bryna C Shemo, Matt Schmachtenberg, Shriram K Sundararaman, Mariella F Toro, Cheryl A Keller, Emily A Farber, Suna Onengut-Gumuscu, Francine E Garrett-Bakelman, Ross Cameron Hardison, Thomas P Loughran, Aakrosh Ratan, Thomas P Loughran
Frequent somatic TET2 mutations in chronic NK-LGL leukemia with distinct patterns of cytopenias. Blood 138 (8) (2021)
Karolina Sienkiewicz, Chunsong Yang, Bryce M Paschal, Aakrosh Ratan
Genomic analyses of the metastasis-derived prostate cancer cell lines LNCaP, VCaP, and PC3-AR. The Prostate 82 (4) (2021)
T Tiffany Wang, Jun Yang, Shubha Dighe, Matthew W Schmachtenberg, Nathan T Leigh, Emily Farber, Suna Onengut-Gumuscu, Thomas P Loughran, Aakrosh Ratan, Thomas P Loughran, Thomas L Olson
Whole Genome Sequencing of Spontaneously Occurring Rat Natural Killer Large Granular Lymphocyte Leukemia Identifies JAK1 Somatic Activating Mutation. Cancers 12 (1) (2020)
Kunal Kathuria, Aakrosh Ratan
SVXplorer: Three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures. PLoS computational biology 16 (3) (2020)
Ajay Chatrath, Manjari Kiran, Pankaj Kumar, Aakrosh Ratan, Anindya Dutta
The Germline Variants rs61757955 and rs34988193 Are Predictive of Survival in Lower Grade Glioma Patients. Molecular cancer research : MCR 17 (5) (2019)
Sheila A Kitchen, Aakrosh Ratan, Oscar C Bedoya-Reina, Richard Burhans, Nicole D Fogarty, Webb Miller, Iliana Brigitta Baums
Genomic Variants Among Threatened Acropora Corals. G3 (Bethesda, Md.) 9 (5) (2019)