Aaron M Fleming

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Venues

Journal of the American Chemical Society

Biochemistry

ACS chemical biology

Chemical research in toxicology

University of Utah (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Utah

United States

PHD :: Chemistry

Publications

Aaron M Fleming, Brandon Leonel Guerra Castañaza Jenkins, Bethany A Buck, Cynthia J Burrows
DNA Damage Accelerates G-Quadruplex Folding in a Duplex-G-Quadruplex-Duplex Context. Journal of the American Chemical Society (2024)
Aaron M Fleming, Brandon Leonel Guerra Castañaza Jenkins, Bethany A Buck, Cynthia J Burrows
DNA Damage Accelerates G-Quadruplex Folding in a Duplex-G-Quadruplex-Duplex Context. Journal of the American Chemical Society (2024)
Aaron M Fleming, Brandon Leonel Guerra Castañaza Jenkins, Bethany A Buck, Cynthia J Burrows
DNA Damage Accelerates G-Quadruplex Folding in a Duplex-G-Quadruplex-Duplex Context. Journal of the American Chemical Society (2024)
Aaron M Fleming, Brandon Leonel Guerra Castañaza Jenkins, Bethany A Buck, Cynthia J Burrows
DNA Damage Accelerates G-Quadruplex Folding in a Duplex-G-Quadruplex-Duplex Context. Journal of the American Chemical Society (2024)
Aaron M Fleming, Praneeth Bommisetti, Songjun Xiao, Vahe Bandarian, Cynthia J Burrows
Direct Nanopore Sequencing for the 17 RNA Modification Types in 36 Locations in the E. coli Ribosome Enables Monitoring of Stress-Dependent Changes. ACS chemical biology (2023)
Cynthia J Burrows, Aaron M Fleming
Bisulfite and Nanopore Sequencing for Pseudouridine in RNA. Accounts of chemical research (2023)
Aaron M Fleming, Renee Tran, Carla A Omaga, Shereen A Howpay Manage, Cynthia J Burrows, Dr John C Conboy
Second Harmonic Generation Interrogation of the Endonuclease APE1 Binding Interaction with G-Quadruplex DNA. Analytical chemistry 94 (43) (2022)
Michael B Chabot, Aaron M Fleming, Cynthia J Burrows
Identification of the Major Product of Guanine Oxidation in DNA by Ozone. Chemical research in toxicology 35 (10) (2022)
Michael B Chabot, Aaron M Fleming, Cynthia J Burrows
Insights into the 5-Carboxamido-5-Formamido-2-Iminohydantoin Structural Isomerization Equilibria. The Journal of organic chemistry 87 (17) (2022)
Shereen A Howpay Manage, Aaron M Fleming, Hsiao-Nung Chen, Cynthia J Burrows
Cysteine Oxidation to Sulfenic Acid in APE1 Aids G-Quadruplex Binding While Compromising DNA Repair. ACS chemical biology 17 (9) (2022)
Rodrigo Galindo-Murillo, Lauren Winkler, Jingwei Ma, Fatjon Hanelli, Aaron M Fleming, Cynthia J Burrows, Thomas E Cheatham
Riboflavin Stabilizes Abasic, Oxidized G-Quadruplex Structures. Biochemistry 61 (4) (2022)
Aaron M Fleming, Songjun Xiao, Cynthia J Burrows
Pseudouridine and N1-Methylpseudouridine Display pH-Independent Reaction Rates with Bisulfite Yielding Ribose Adducts. Organic letters 24 (33) (2022)
Aaron M Fleming, Nicole J Mathewson, Shereen A Howpay Manage, Cynthia J Burrows
Nanopore Dwell Time Analysis Permits Sequencing and Conformational Assignment of Pseudouridine in SARS-CoV-2. ACS central science 7 (10) (2021)
Juntaek Oh, Aaron M Fleming, Jun Xu, Jenny Chong, Cynthia J Burrows, Dong Wang
RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-π and CH-π interactions. Proceedings of the National Academy of Sciences of the United States of America 117 (17) (2020)
Aaron M Fleming, Judy Zhu, Manuel Jara-Espejo, Cynthia J Burrows
Cruciform DNA Sequences in Gene Promoters Can Impact Transcription upon Oxidative Modification of 2'-Deoxyguanosine. Biochemistry 59 (28) (2020)
Aaron M Fleming, Cynthia J Burrows
Interplay of Guanine Oxidation and G-Quadruplex Folding in Gene Promoters. Journal of the American Chemical Society 142 (3) (2020)
Manuel Jara-Espejo, Aaron M Fleming, Cynthia J Burrows
Potential G-Quadruplex Forming Sequences and N6-Methyladenosine Colocalize at Human Pre-mRNA Intron Splice Sites. ACS chemical biology 15 (6) (2020)
Aaron M Fleming, Judy Zhu, Yun Ding, Selma Esders, Cynthia J Burrows
Oxidative Modification of Guanine in a Potential Z-DNA-Forming Sequence of a Gene Promoter Impacts Gene Expression. Chemical research in toxicology 32 (5) (2019)
Samuel C J Redstone, Aaron M Fleming, Cynthia J Burrows
Oxidative Modification of the Potential G-Quadruplex Sequence in the PCNA Gene Promoter Can Turn on Transcription. Chemical research in toxicology 32 (3) (2019)
Junzhou Wu, Shana J Sturla, Cynthia J Burrows, Aaron M Fleming
Impact of DNA Oxidation on Toxicology: From Quantification to Genomics. Chemical research in toxicology 32 (3) (2019)
Aaron M Fleming, Anton Alenko, Jay P Kitt, Anita M Orendt, Peter F Flynn, Joel M Harris, Cynthia J Burrows
Structural Elucidation of Bisulfite Adducts to Pseudouridine That Result in Deletion Signatures during Reverse Transcription of RNA. Journal of the American Chemical Society 141 (41) (2019)
Aaron M Fleming, Judy Zhu, Shereen A Howpay Manage, Cynthia J Burrows
Human NEIL3 Gene Expression Regulated by Epigenetic-Like Oxidative DNA Modification. Journal of the American Chemical Society 141 (28) (2019)
Suryakant Mishra, Vishvendra S Poonia, Claudio Fontanesi, Ron Naaman, Aaron M Fleming, Cynthia J Burrows
Effect of Oxidative Damage on Charge and Spin Transport in DNA. Journal of the American Chemical Society 141 (1) (2018)
Hang Ren, Cameron G Cheyne, Aaron M Fleming, Cynthia J Burrows, Henry Sheldon White
Single-Molecule Titration in a Protein Nanoreactor Reveals the Protonation/Deprotonation Mechanism of a C:C Mismatch in DNA. Journal of the American Chemical Society 140 (15) (2018)
Carla A Omaga, Aaron M Fleming, Cynthia J Burrows
The Fifth Domain in the G-Quadruplex-Forming Sequence of the Human NEIL3 Promoter Locks DNA Folding in Response to Oxidative Damage. Biochemistry 57 (20) (2018)
Tao Zeng, Aaron M Fleming, Yun Ding, Hang Ren, Henry Sheldon White, Cynthia J Burrows
Nanopore Analysis of the 5-Guanidinohydantoin to Iminoallantoin Isomerization in Duplex DNA. The Journal of organic chemistry 83 (7) (2018)
W Andrew Vinyard, Aaron M Fleming, Jingwei Ma, Cynthia J Burrows
Characterization of G-Quadruplexes in Chlamydomonas reinhardtii and the Effects of Polyamine and Magnesium Cations on Structure and Stability. Biochemistry 57 (47) (2018)
Judy Zhu, Aaron M Fleming, Cynthia J Burrows
The RAD17 Promoter Sequence Contains a Potential Tail-Dependent G-Quadruplex That Downregulates Gene Expression upon Oxidative Modification. ACS chemical biology 13 (9) (2018)
Cherie S Tan, Aaron M Fleming, Hang Ren, Cynthia J Burrows, Henry Sheldon White
γ-Hemolysin Nanopore Is Sensitive to Guanine-to-Inosine Substitutions in Double-Stranded DNA at the Single-Molecule Level. Journal of the American Chemical Society 140 (43) (2018)
Aaron M Fleming, Judy Zhu, Yun Ding, Joshua A Visser, Julia Zhu, Cynthia J Burrows
Human DNA Repair Genes Possess Potential G-Quadruplex Sequences in Their Promoters and 5'-Untranslated Regions. Biochemistry 57 (6) (2018)
Aaron M Fleming, Judy Zhu, Yun Ding, Cynthia J Burrows
8-Oxo-7,8-dihydroguanine in the Context of a Gene Promoter G-Quadruplex Is an On-Off Switch for Transcription. ACS chemical biology 12 (9) (2017)
Anton Alenko, Aaron M Fleming, Cynthia J Burrows
Reverse Transcription Past Products of Guanine Oxidation in RNA Leads to Insertion of A and C opposite 8-Oxo-7,8-dihydroguanine and A and G opposite 5-Guanidinohydantoin and Spiroiminodihydantoin Diastereomers. Biochemistry 56 (38) (2017)
Tao Zeng, Aaron M Fleming, Yun Ding, Henry Sheldon White, Cynthia J Burrows
Interrogation of Base Pairing of the Spiroiminodihydantoin Diastereomers Using the α-Hemolysin Latch. Biochemistry 56 (11) (2017)
Yun Ding, Aaron M Fleming, Cynthia J Burrows
Sequencing the Mouse Genome for the Oxidatively Modified Base 8-Oxo-7,8-dihydroguanine by OG-Seq. Journal of the American Chemical Society 139 (7) (2017)
Aaron M Fleming, Yun Ding, R Aaron Rogers, Judy Zhu, Julia Zhu, Ashlee D Burton, Connor B Carlisle, Cynthia J Burrows
4n-1 Is a "Sweet Spot" in DNA i-Motif Folding of 2'-Deoxycytidine Homopolymers. Journal of the American Chemical Society 139 (13) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Aaron M Fleming