Thomas E Cheatham

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 33

Top Venues

Journal of chemical theory and computation

The journal of physical chemistry. B

Journal of biomolecular structure & dynamics

The Journal of organic chemistry

University of Utah

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Utah Jan 01 2000

United States

Professor / Director :: Medicinal Chemistry / CHPC

Publications

Maria Carolina P Lima, Braxten D Hornsby, Carol S Lim, Thomas E Cheatham
Molecular Modeling of Single- and Double-Hydrocarbon-Stapled Coiled-Coil Inhibitors against Bcr-Abl: Toward a Treatment Strategy for CML. The journal of physical chemistry. B (2024)
Maria Carolina P Lima, Braxten D Hornsby, Carol S Lim, Thomas E Cheatham
Molecular Modeling of Single- and Double-Hydrocarbon-Stapled Coiled-Coil Inhibitors against Bcr-Abl: Toward a Treatment Strategy for CML. The journal of physical chemistry. B 128 (27) (2024)
Maria Carolina P Lima, Braxten D Hornsby, Carol S Lim, Thomas E Cheatham
Molecular Modeling of Single- and Double-Hydrocarbon-Stapled Coiled-Coil Inhibitors against Bcr-Abl: Toward a Treatment Strategy for CML. The journal of physical chemistry. B 128 (27) (2024)
Maria Carolina P Lima, Braxten D Hornsby, Carol S Lim, Thomas E Cheatham
Molecular Modeling of Single- and Double-Hydrocarbon-Stapled Coiled-Coil Inhibitors against Bcr-Abl: Toward a Treatment Strategy for CML. The journal of physical chemistry. B 128 (27) (2024)
Maria Carolina P Lima, Braxten D Hornsby, Carol S Lim, Thomas E Cheatham
Molecular Modeling of Single- and Double-Hydrocarbon-Stapled Coiled-Coil Inhibitors against Bcr-Abl: Toward a Treatment Strategy for CML. The journal of physical chemistry. B 128 (27) (2024)
Maria Carolina P Lima, Braxten D Hornsby, Carol S Lim, Thomas E Cheatham
Molecular Modeling of Single- and Double-Hydrocarbon-Stapled Coiled-Coil Inhibitors against Bcr-Abl: Toward a Treatment Strategy for CML. The journal of physical chemistry. B 128 (27) (2024)
Lauren Winkler, Rodrigo Galindo-Murillo, Thomas E Cheatham
Assessment of A- to B- DNA Transitions Utilizing the Drude Polarizable Force Field. Journal of chemical theory and computation (2023)
Tamilselvan Rajasekaran, Graeme C Freestone, Rodrigo Galindo-Murillo, Barbara Lugato, Hans Gaus, Michael T Migawa, Eric E Swayze, Thomas E Cheatham, Punit P Seth, Stephen Hanessian
Systematic Investigation of Tether Length and Phosphorus Configuration in Backbone Constrained Macrocyclic Nucleic Acids to Modulate Binding Kinetics for RNA. The Journal of organic chemistry 88 (6) (2023)
Tamilselvan Rajasekaran, Graeme C Freestone, Rodrigo Galindo-Murillo, Barbara Lugato, Hans Gaus, Michael T Migawa, Eric E Swayze, Thomas E Cheatham, Punit P Seth, Stephen Hanessian
Systematic Investigation of Tether Length and Phosphorus Configuration in Backbone Constrained Macrocyclic Nucleic Acids to Modulate Binding Kinetics for RNA. The Journal of organic chemistry 88 (6) (2023)
Olivia Love, Lauren Winkler, Thomas E Cheatham
van der Waals Parameter Scanning with Amber Nucleic Acid Force Fields: Revisiting Means to Better Capture the RNA/DNA Structure through MD. Journal of chemical theory and computation 20 (2) (2023)
Lauren Winkler, Thomas E Cheatham
Benchmarking the Drude Polarizable Force Field Using the r(GACC) Tetranucleotide. Journal of chemical information and modeling (2023)
Olivia Love, Rodrigo Galindo-Murillo, Marie Zgarbová, Jiřı Šponer, Petr Jurečka, Thomas E Cheatham
Assessing the Current State of Amber Force Field Modifications for DNA─2023 Edition. Journal of chemical theory and computation (2023)
Olivia Love, Lauren Winkler, Thomas E Cheatham
van der Waals Parameter Scanning with Amber Nucleic Acid Force Fields: Revisiting Means to Better Capture the RNA/DNA Structure through MD. Journal of chemical theory and computation 20 (2) (2023)
Tamilselvan Rajasekaran, Graeme C Freestone, Rodrigo Galindo-Murillo, Barbara Lugato, Hans Gaus, Michael T Migawa, Eric E Swayze, Thomas E Cheatham, Punit P Seth, Stephen Hanessian
Systematic Investigation of Tether Length and Phosphorus Configuration in Backbone Constrained Macrocyclic Nucleic Acids to Modulate Binding Kinetics for RNA. The Journal of organic chemistry (2023)
David A Case, Hasan Metin Aktulga, Kellon Belfon, David S Cerutti, Gerardo Andrés Cisneros, Vinícius Wilian D Cruzeiro, Negin Forouzesh, Timothy J Giese, Andreas W Götz, Holger Gohlke, Saeed Izadi, Koushik Kasavajhala, Mehmet C Kaymak, Edward King, Tom Kurtzman, Tai-Sung Lee, Pengfei Li, Jian Liu, Tyler Luchko, Ray Luo, Madushanka Manathunga, Matías R Machado, Hai Minh Nguyen, Kurt A O'Hearn, Alexey V Onufriev, Feng Pan, Sergio Pantano, Ruxi Qi, Ali Rahnamoun, Ali Risheh, Stephan Schott-Verdugo, Akhil Shajan, Jason Swails, Junmei Wang, Haixin Wei, Xiongwu Wu, Yongxian Wu, Shi Zhang, Shiji Zhao, Qiang Zhu, Thomas E Cheatham, Daniel R Roe, Adrian E Roitberg, Carlos L Simmerling, Darrin M York, Maria C Nagan, Kenneth M Merz
AmberTools. Journal of chemical information and modeling (2023)
Olivia Love, Lauren Winkler, Thomas E Cheatham
van der Waals Parameter Scanning with Amber Nucleic Acid Force Fields: Revisiting Means to Better Capture the RNA/DNA Structure through MD. Journal of chemical theory and computation (2023)
Lauren Winkler, Rodrigo Galindo-Murillo, Thomas E Cheatham
Structures and Dynamics of DNA Mini-Dumbbells Are Force Field Dependent. Journal of chemical theory and computation (2023)
Olivia Love, Lauren Winkler, Thomas E Cheatham
van der Waals Parameter Scanning with Amber Nucleic Acid Force Fields: Revisiting Means to Better Capture the RNA/DNA Structure through MD. Journal of chemical theory and computation 20 (2) (2023)
Olivia Love, Lauren Winkler, Thomas E Cheatham
van der Waals Parameter Scanning with Amber Nucleic Acid Force Fields: Revisiting Means to Better Capture the RNA/DNA Structure through MD. Journal of chemical theory and computation 20 (2) (2023)
Olivia Love, Lauren Winkler, Thomas E Cheatham
van der Waals Parameter Scanning with Amber Nucleic Acid Force Fields: Revisiting Means to Better Capture the RNA/DNA Structure through MD. Journal of chemical theory and computation 20 (2) (2023)
Olivia Love, Maria Carolina P Lima, Casey Clark, Sean Cornillie, Shelly Roalstad, Thomas E Cheatham
Evaluating the accuracy of the AMBER protein force fields in modeling dihydrofolate reductase structures: misbalance in the conformational arrangements of the flexible loop domains. Journal of biomolecular structure & dynamics (2022)
Rodrigo Galindo-Murillo, Lauren Winkler, Jingwei Ma, Fatjon Hanelli, Aaron M Fleming, Cynthia J Burrows, Thomas E Cheatham
Riboflavin Stabilizes Abasic, Oxidized G-Quadruplex Structures. Biochemistry 61 (4) (2022)
Tamilselvan Rajasekaran, Graeme C Freestone, Rodrigo Galindo-Murillo, Barbara Lugato, Lorena Rico, Juan C Salinas, Hans Gaus, Michael T Migawa, Eric E Swayze, Thomas E Cheatham, Stephen Hanessian, Thazha P Prakash
Backbone Hydrocarbon-Constrained Nucleic Acids Modulate Hybridization Kinetics for RNA. Journal of the American Chemical Society 144 (4) (2022)
Rodrigo Galindo-Murillo, Thomas E Cheatham
Transient Hoogsteen Base Pairs Observed in Unbiased Molecular Dynamics Simulations of DNA. The journal of physical chemistry letters 13 (27) (2022)
Julian L Kessler, Grace Kang, Zhao Qin, Helen Kang, Frank G Whitby, Thomas E Cheatham, Christopher P Hill, Yang Li, S Michael Yu
Peptoid Residues Make Diverse, Hyperstable Collagen Triple-Helices. Journal of the American Chemical Society 143 (29) (2021)
Rodrigo Galindo-Murillo, Lauren Winkler, Juan Carlos García-Ramos, Lena Ruiz-Azuara, Fernando Cortés-Guzmán, Thomas E Cheatham
Ancillary Ligand in Ternary CuII Complexes Guides Binding Selectivity toward Minor-Groove DNA. The journal of physical chemistry. B 124 (51) (2020)
Hamed S Hayatshahi, Niel M Henriksen, Thomas E Cheatham
Consensus Conformations of Dinucleoside Monophosphates Described with Well-Converged Molecular Dynamics Simulations. Journal of chemical theory and computation 14 (3) (2018)
Rodrigo Galindo-Murillo, Thomas E Cheatham, Robert C Hopkins
Exploring potentially alternative non-canonical DNA duplex structures through simulation. Journal of biomolecular structure & dynamics 37 (9) (2018)
Sean P Cornillie, Benjamin J Bruno, Carol S Lim, Thomas E Cheatham
Computational Modeling of Stapled Peptides toward a Treatment Strategy for CML and Broader Implications in the Design of Lengthy Peptide Therapeutics. The journal of physical chemistry. B 122 (14) (2018)
Hamed S Hayatshahi, Christina Bergonzo, Thomas E Cheatham
Investigating the ion dependence of the first unfolding step of GTPase-Associating Center ribosomal RNA. Journal of biomolecular structure & dynamics 36 (1) (2017)
Hamed S Hayatshahi, Daniel R Roe, Rodrigo Galindo-Murillo, Kathleen B Hall, Thomas E Cheatham
Computational Assessment of Potassium and Magnesium Ion Binding to a Buried Pocket in GTPase-Associating Center RNA. The journal of physical chemistry. B 121 (3) (2017)
Marie Zgarbová, Petr Jurečka, Filip Lankaš, Thomas E Cheatham, Jiří Šponer, Michal Otyepka
Influence of BII Backbone Substates on DNA Twist: A Unified View and Comparison of Simulation and Experiment for All 136 Distinct Tetranucleotide Sequences. Journal of chemical information and modeling 57 (2) (2017)
Rodrigo Galindo-Murillo, Thomas E Cheatham
Computational DNA binding studies of (-)-epigallocatechin-3-gallate. Journal of biomolecular structure & dynamics 36 (13) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Thomas E Cheatham