Dong Wang

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 58

Top Venues

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Journal of the American Chemical Society

Genome biology and evolution

University of California San Diego

Massachusetts Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Diego

United States

Professor :: Skaggs School of Pharmacy and Pharmaceutical Sciences; Department of Cellular and Molecular Medicine

University of California, San Diego

United States

Associate Professor :: Skaggs School of Pharmacy and Pharmaceutical Sciences; Department of Cellular and Molecular Medicine

University of California, San Diego

United States

Assistant Professor :: Skaggs School of Pharmacy and Pharmaceutical Sciences; Department of Cellular and Molecular Medicine

Education History

Massachusetts Institute of Technology

United States

PHD :: Chemistry

Peking University

China

BSC :: Chemistry

Publications

Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Atousa Mehrani, Marianne E Bowman, Gordon Louie, Dario Oliveira Passos, Selena Đorđević-Marquardt, Mario Mietzsch, Joshua A Hull, Shuichi Hoshika, Benjamin A Barad, Danielle A Grotjahn, Robert McKenna, Mavis Agbandje-McKenna, Steven A Benner, Joseph A P Noel, Dong Wang, Yong Zi Tan, Dmitry Lyumkis
Overcoming resolution attenuation during tilted cryo-EM data collection. Nature communications 15 (1) (2024)
Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Atousa Mehrani, Marianne E Bowman, Gordon Louie, Dario Oliveira Passos, Selena Đorđević-Marquardt, Mario Mietzsch, Joshua A Hull, Shuichi Hoshika, Benjamin A Barad, Danielle A Grotjahn, Robert McKenna, Mavis Agbandje-McKenna, Steven A Benner, Joseph A P Noel, Dong Wang, Yong Zi Tan, Dmitry Lyumkis
Overcoming resolution attenuation during tilted cryo-EM data collection. Nature communications 15 (1) (2024)
Xuan Zhang, Jun Xu, Jing Hu, Sitao Zhang, Yajing Hao, Dongyang Zhang, Hao Qian, Dong Wang, Xiang-Dong Fu
Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation. Nature communications 15 (1) (2024)
Jianhai Chen, Qingrong Li, Shengqian Xia, Deanna Arsala, Dylan Sosa, Dong Wang, Manyuan Long
The Rapid Evolution of De Novo Proteins in Structure and Complex. Genome biology and evolution 16 (6) (2024)
Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Atousa Mehrani, Marianne E Bowman, Gordon Louie, Dario Oliveira Passos, Selena Đorđević-Marquardt, Mario Mietzsch, Joshua A Hull, Shuichi Hoshika, Benjamin A Barad, Danielle A Grotjahn, Robert McKenna, Mavis Agbandje-McKenna, Steven A Benner, Joseph A P Noel, Dong Wang, Yong Zi Tan, Dmitry Lyumkis
Overcoming resolution attenuation during tilted cryo-EM data collection. Nature communications 15 (1) (2024)
Xuan Zhang, Jun Xu, Jing Hu, Sitao Zhang, Yajing Hao, Dongyang Zhang, Hao Qian, Dong Wang, Xiang-Dong Fu
Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation. Nature communications 15 (1) (2024)
Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proceedings of the National Academy of Sciences of the United States of America 121 (3) (2024)
Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proceedings of the National Academy of Sciences of the United States of America 121 (3) (2024)
Jianhai Chen, Qingrong Li, Shengqian Xia, Deanna Arsala, Dylan Sosa, Dong Wang, Manyuan Long
The Rapid Evolution of De Novo Proteins in Structure and Complex. Genome biology and evolution 16 (6) (2024)
Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Atousa Mehrani, Marianne E Bowman, Gordon Louie, Dario Oliveira Passos, Selena Đorđević-Marquardt, Mario Mietzsch, Joshua A Hull, Shuichi Hoshika, Benjamin A Barad, Danielle A Grotjahn, Robert McKenna, Mavis Agbandje-McKenna, Steven A Benner, Joseph A P Noel, Dong Wang, Yong Zi Tan, Dmitry Lyumkis
Overcoming resolution attenuation during tilted cryo-EM data collection. Nature communications 15 (1) (2024)
Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proceedings of the National Academy of Sciences of the United States of America 121 (3) (2024)
Shijun Gao, Peini Hou, Juntaek Oh, Dong Wang, Marc M Greenberg
Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. Journal of the American Chemical Society 146 (9) (2024)
Shijun Gao, Peini Hou, Juntaek Oh, Dong Wang, Marc M Greenberg
Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. Journal of the American Chemical Society 146 (9) (2024)
Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proceedings of the National Academy of Sciences of the United States of America 121 (3) (2024)
Kathiresan Selvam, Jun Xu, Hannah E Wilson, Juntaek Oh, Qingrong Li, Dong Wang, John J Wyrick
Elf1 promotes transcription-coupled repair in yeast by using its C-terminal domain to bind TFIIH. Nature communications 15 (1) (2024)
Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proceedings of the National Academy of Sciences of the United States of America 121 (3) (2024)
Shijun Gao, Peini Hou, Juntaek Oh, Dong Wang, Marc M Greenberg
Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. Journal of the American Chemical Society 146 (9) (2024)
Jianhai Chen, Qingrong Li, Shengqian Xia, Deanna Arsala, Dylan Sosa, Dong Wang, Manyuan Long
The Rapid Evolution of De Novo Proteins in Structure and Complex. Genome biology and evolution 16 (6) (2024)
Xuan Zhang, Jun Xu, Jing Hu, Sitao Zhang, Yajing Hao, Dongyang Zhang, Hao Qian, Dong Wang, Xiang-Dong Fu
Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation. Nature communications 15 (1) (2024)
Kathiresan Selvam, Jun Xu, Hannah E Wilson, Juntaek Oh, Qingrong Li, Dong Wang, John J Wyrick
Elf1 promotes transcription-coupled repair in yeast by using its C-terminal domain to bind TFIIH. Nature communications 15 (1) (2024)
Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Atousa Mehrani, Marianne E Bowman, Gordon Louie, Dario Oliveira Passos, Selena Đorđević-Marquardt, Mario Mietzsch, Joshua A Hull, Shuichi Hoshika, Benjamin A Barad, Danielle A Grotjahn, Robert McKenna, Mavis Agbandje-McKenna, Steven A Benner, Joseph A P Noel, Dong Wang, Yong Zi Tan, Dmitry Lyumkis
Overcoming resolution attenuation during tilted cryo-EM data collection. Nature communications 15 (1) (2024)
Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proceedings of the National Academy of Sciences of the United States of America 121 (3) (2024)
Xuan Zhang, Jun Xu, Jing Hu, Sitao Zhang, Yajing Hao, Dongyang Zhang, Hao Qian, Dong Wang, Xiang-Dong Fu
Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation. Nature communications 15 (1) (2024)
Jianhai Chen, Qingrong Li, Shengqian Xia, Deanna Arsala, Dylan Sosa, Dong Wang, Manyuan Long
The Rapid Evolution of De Novo Proteins in Structure and Complex. Genome biology and evolution 16 (6) (2024)
Jianhai Chen, Qingrong Li, Shengqian Xia, Deanna Arsala, Dylan Sosa, Dong Wang, Manyuan Long
The Rapid Evolution of De Novo Proteins in Structure and Complex. Genome biology and evolution 16 (6) (2024)
Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Atousa Mehrani, Marianne E Bowman, Gordon Louie, Dario Oliveira Passos, Selena Đorđević-Marquardt, Mario Mietzsch, Joshua A Hull, Shuichi Hoshika, Benjamin A Barad, Danielle A Grotjahn, Robert McKenna, Mavis Agbandje-McKenna, Steven A Benner, Joseph A P Noel, Dong Wang, Yong Zi Tan, Dmitry Lyumkis
Overcoming resolution attenuation during tilted cryo-EM data collection. Nature communications 15 (1) (2024)
Shijun Gao, Peini Hou, Juntaek Oh, Dong Wang, Marc M Greenberg
Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. Journal of the American Chemical Society 146 (9) (2024)
Shijun Gao, Peini Hou, Juntaek Oh, Dong Wang, Marc M Greenberg
Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. Journal of the American Chemical Society (2024)
Kathiresan Selvam, Jun Xu, Hannah E Wilson, Juntaek Oh, Qingrong Li, Dong Wang, John J Wyrick
Elf1 promotes transcription-coupled repair in yeast by using its C-terminal domain to bind TFIIH. Nature communications 15 (1) (2024)
Shijun Gao, Peini Hou, Juntaek Oh, Dong Wang, Marc M Greenberg
Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. Journal of the American Chemical Society 146 (9) (2024)
Shijun Gao, Peini Hou, Juntaek Oh, Dong Wang, Marc M Greenberg
Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. Journal of the American Chemical Society 146 (9) (2024)
Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Atousa Mehrani, Marianne E Bowman, Gordon Louie, Dario Oliveira Passos, Selena Đorđević-Marquardt, Mario Mietzsch, Joshua A Hull, Shuichi Hoshika, Benjamin A Barad, Danielle A Grotjahn, Robert McKenna, Mavis Agbandje-McKenna, Steven A Benner, Joseph A P Noel, Dong Wang, Yong Zi Tan, Dmitry Lyumkis
Overcoming resolution attenuation during tilted cryo-EM data collection. Nature communications 15 (1) (2024)
Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proceedings of the National Academy of Sciences of the United States of America 121 (3) (2024)
Juntaek Oh, Michiko Kimoto, Haoqing Xu, Jenny Chong, Ichiro Hirao, Dong Wang
Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase. Nature communications 14 (1) (2023)
Juntaek Oh, Michiko Kimoto, Haoqing Xu, Jenny Chong, Ichiro Hirao, Dong Wang
Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase. Nature communications 14 (1) (2023)
Juntaek Oh, Michiko Kimoto, Haoqing Xu, Jenny Chong, Ichiro Hirao, Dong Wang
Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase. Nature communications 14 (1) (2023)
Juntaek Oh, Michiko Kimoto, Haoqing Xu, Jenny Chong, Ichiro Hirao, Dong Wang
Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase. Nature communications 14 (1) (2023)
Juntaek Oh, Zelin Shan, Shuichi Hoshika, Jun Xu, Jenny Chong, Steven A Benner, Dmitry Lyumkis, Dong Wang
A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase. Nature communications 14 (1) (2023)
Juntaek Oh, Michiko Kimoto, Haoqing Xu, Jenny Chong, Ichiro Hirao, Dong Wang
Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase. Nature communications 14 (1) (2023)
Juntaek Oh, Tiezheng Jia, Jun Xu, Jenny Chong, Peter B Dervan, Dong Wang
RNA polymerase II trapped on a molecular treadmill: Structural basis of persistent transcriptional arrest by a minor groove DNA binder. Proceedings of the National Academy of Sciences of the United States of America 119 (3) (2022)
Wei Yan, Minghui Cao, Xianhui Ruan, Li Jiang, Sylvia Lee, Adriana Lemanek, Majid Ghassemian, Donald P Pizzo, Yuhao Wan, Yueqing Qiao, Andrew R Chin, Erika Duggan, Dong Wang, John P Nolan, Jeffrey D Esko, Simon Schenk, Shizhen Emily Wang
Cancer-cell-secreted miR-122 suppresses O-GlcNAcylation to promote skeletal muscle proteolysis. Nature cell biology 24 (5) (2022)
Juntaek Oh, Ji Shin, Ilona Christy Unarta, Wei Wang, Aaron W Feldman, Rebekah J Karadeema, Liang Xu, Jun Xu, Jenny Chong, Ramanarayanan Krishnamurthy, Xuhui Huang, Floyd E Romesberg, Dong Wang
Transcriptional processing of an unnatural base pair by eukaryotic RNA polymerase II. Nature chemical biology 17 (8) (2021)
Chunli Yan, Thomas Dodd, Jina Yu, Bernice Leung, Jun Xu, Juntaek Oh, Dong Wang, Ivaylo Ivanov
Mechanism of Rad26-assisted rescue of stalled RNA polymerase II in transcription-coupled repair. Nature communications 12 (1) (2021)
Shuofeng Yuan, Xin Yin, Xiangzhi Meng, Jasper Fuk-Woo Chan, Zi-Wei Ye, Laura Riva, Lars Pache, Chris Chun-Yiu Chan, Pok-Man Lai, Chris Chung-Sing Chan, Vincent Kwok-Man Poon, Andrew Chak-Yiu Lee, Naoko Matsunaga, Yuan Pu, Chun-Kit Yuen, Jianli Cao, Ronghui Liang, Kaiming Tang, Li Sheng, Yushen Du, Wan Xu, Chit-Ying Lau, Ko-Yung Sit, Wing Kuk Timmy Au, Runming Wang, Yu-Yuan Zhang, Yan-Dong Tang, Thomas Mandel Clausen, Jessica Pihl, Juntaek Oh, Kong-Hung Sze, Anna Jian-Xia Zhang, Hin Chu, Raven K H Kok, Dong Wang, Xue-Hui Cai, Jeffrey D Esko, Ivan Fan-Ngai Hung, Ronald Adolphus Li, Hong-Lin Chen, Hongzhe Sun, Dong-Yan Jin, Ren Sun, Sumit K Chanda, Kwok-Yung Yuen
Clofazimine broadly inhibits coronaviruses including SARS-CoV-2. Nature 593 (7859) (2021)
Maja Milanovic, Zhengping Shao, Verna M Estes, Xiaobin S Wang, Demis Menolfi, Xiaohui Lin, Brian J Lee, Jun Xu, Olivia M Cupo, Dong Wang, Shan Zha
FATC Domain Deletion Compromises ATM Protein Stability, Blocks Lymphocyte Development, and Promotes Lymphomagenesis. Journal of immunology (Baltimore, Md. : 1950) 206 (6) (2021)
Jun Xu, Jenny Chong, Dong Wang
Opposite roles of transcription elongation factors Spt4/5 and Elf1 in RNA polymerase II transcription through B-form versus non-B DNA structures. Nucleic acids research 49 (9) (2021)
Jun Xu, Jenny Chong, Dong Wang
Strand-specific effect of Rad26 and TFIIS in rescuing transcriptional arrest by CAG trinucleotide repeat slip-outs. Nucleic acids research 49 (13) (2021)
Juntaek Oh, Aaron M Fleming, Jun Xu, Jenny Chong, Cynthia J Burrows, Dong Wang
RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-π and CH-π interactions. Proceedings of the National Academy of Sciences of the United States of America 117 (17) (2020)
Jun Xu, Wei Wang, Liang Xu, Jia-Yu Chen, Jenny Chong, Juntaek Oh, Andres E Leschziner, Xiang-Dong Fu, Dong Wang
Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers. Proceedings of the National Academy of Sciences of the United States of America 117 (41) (2020)
Lin Di, Yusi Fu, Yue Sun, Jie Li, Lu Liu, Jiacheng Yao, Guanbo Wang, Yalei Wu, Kaiqin Lao, Raymond W Lee, Genhua Zheng, Jun Xu, Juntaek Oh, Dong Wang, X Sunney Xie, Yanyi Huang, Jianbian Wang
RNA sequencing by direct tagmentation of RNA/DNA hybrids. Proceedings of the National Academy of Sciences of the United States of America 117 (6) (2020)
Dong Wang
A panorama of transcription-coupled repair in yeast chromatin. Proceedings of the National Academy of Sciences of the United States of America 117 (35) (2020)
Maja Milanovic, Lisa M Houghton, Demis Menolfi, Ji-Hoon Lee, Kenta Yamamoto, Yang Li, Brian J Lee, Jun Xu, Verna M Estes, Dong Wang, Peter J McKinnon, Tanya T Paull, Shan Zha
The Cancer-Associated ATM R3008H Mutation Reveals the Link between ATM Activation and Its Exchange. Cancer research 81 (2) (2020)
Kirill A Konovalov, Fátima Pardo-Avila, Carmen Ka Man Tse, Juntaek Oh, Dong Wang, Xuhui Huang
8-Oxo-guanine DNA damage induces transcription errors by escaping two distinct fidelity control checkpoints of RNA polymerase II. The Journal of biological chemistry 294 (13) (2019)
Wei Wang, Jun Xu, Oliver Limbo, Jia Fei, George A Kassavetis, Jenny Chong, James T Kadonaga, Paul Russell, Bing Li, Dong Wang
Molecular basis of chromatin remodeling by Rhp26, a yeast CSB ortholog. Proceedings of the National Academy of Sciences of the United States of America 116 (13) (2019)
Marta Sanz-Murillo, Jun Xu, Georgiy A Belogurov, Olga Calvo, David Gil-Carton, María Moreno-Morcillo, Dong Wang, Carlos Fernández-Tornero
Structural basis of RNA polymerase I stalling at UV light-induced DNA damage. Proceedings of the National Academy of Sciences of the United States of America 115 (36) (2018)
Wei Wang, Celine Walmacq, Jenny Chong, Mikhail Kashlev, Dong Wang
Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proceedings of the National Academy of Sciences of the United States of America 115 (11) (2018)
Andrea Local, Hui Huang, Claudio P Albuquerque, Namit Singh, Ah Young Lee, Wei Wang, Chaochen Wang, Judy E Hsia, Andrew K Shiau, Kai Ge, Kevin D Corbett, Dong Wang, Huilin Zhou, Bing Ren
Identification of H3K4me1-associated proteins at mammalian enhancers. Nature genetics 50 (1) (2017)
Wei Wang, Liang Xu, Lulu Hu, Jenny Chong, Chuan He, Dong Wang
Epigenetic DNA Modification N6-Methyladenine Causes Site-Specific RNA Polymerase II Transcriptional Pausing. Journal of the American Chemical Society 139 (41) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Dong Wang