Alban Ramette (A Ramette)

Scopus Author ID ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 28

Top Venues

Microbiology spectrum

Pathogens (Basel, Switzerland)

The Journal of infectious diseases

Microbiology resource announcements

University of Bern

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Bern Sep 12 2016

Switzerland

bioinformatics, biostatistics :: Institute for Infectious Diseases (IFIK)

University of Bern Sep 01 2014 - Aug 31 2016

Switzerland

research scientist :: Institute of Social and Preventive Medicine (ISPM)

Publications

Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, Matteo Carrara, Lorenzo Cerutti, Chaoran Chen, Samuel Cordey, Alexis Dumoulin, Louis du Plessis, Marc Friedli, Yannick Gerth, Gilbert Greub, Adrian Härri, Hans H Hirsch, Cedric Howald, Michael Huber, Alexander Imhof, Laurent Kaiser, Verena Kufner, Stephen L Leib, Karoline Leuzinger, Etleva Lleshi, Gladys Martinetti, Mirjam Mäusezahl, Milo Moraz, Richard A Neher, Oliver Nolte, Alban Ramette, Maurice Redondo, Lorenz Risch, Lionel Rohner, Tim Roloff, Pascal Schläepfer, Katrin Schneider, Franziska Singer, Valeria Spina, Tanja Stadler, Erik Studer, Ivan Topolsky, Alexandra Trkola, Daniel Walther, Nadia Wohlwend, Cinzia Zehnder, Aitana Neves, Adrian Egli, null null
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology spectrum 12 (5) (2024)
Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, Matteo Carrara, Lorenzo Cerutti, Chaoran Chen, Samuel Cordey, Alexis Dumoulin, Louis du Plessis, Marc Friedli, Yannick Gerth, Gilbert Greub, Adrian Härri, Hans H Hirsch, Cedric Howald, Michael Huber, Alexander Imhof, Laurent Kaiser, Verena Kufner, Stephen L Leib, Karoline Leuzinger, Etleva Lleshi, Gladys Martinetti, Mirjam Mäusezahl, Milo Moraz, Richard A Neher, Oliver Nolte, Alban Ramette, Maurice Redondo, Lorenz Risch, Lionel Rohner, Tim Roloff, Pascal Schläepfer, Katrin Schneider, Franziska Singer, Valeria Spina, Tanja Stadler, Erik Studer, Ivan Topolsky, Alexandra Trkola, Daniel Walther, Nadia Wohlwend, Cinzia Zehnder, Aitana Neves, Adrian Egli, null null
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology spectrum (2024)
Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, Matteo Carrara, Lorenzo Cerutti, Chaoran Chen, Samuel Cordey, Alexis Dumoulin, Louis du Plessis, Marc Friedli, Yannick Gerth, Gilbert Greub, Adrian Härri, Hans H Hirsch, Cedric Howald, Michael Huber, Alexander Imhof, Laurent Kaiser, Verena Kufner, Stephen L Leib, Karoline Leuzinger, Etleva Lleshi, Gladys Martinetti, Mirjam Mäusezahl, Milo Moraz, Richard A Neher, Oliver Nolte, Alban Ramette, Maurice Redondo, Lorenz Risch, Lionel Rohner, Tim Roloff, Pascal Schläepfer, Katrin Schneider, Franziska Singer, Valeria Spina, Tanja Stadler, Erik Studer, Ivan Topolsky, Alexandra Trkola, Daniel Walther, Nadia Wohlwend, Cinzia Zehnder, Aitana Neves, Adrian Egli, null null
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology spectrum 12 (5) (2024)
Miguel A Terrazos Miani, Loïc Borcard, Sonja Gempeler, Christian Baumann, Pascal Bittel, Stephen L Leib, Stefan Neuenschwander, Alban Ramette
NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A Rapid, PCR-Free Method for SARS-CoV-2 Whole-Genome Sequencing in Clinical Samples. Pathogens (Basel, Switzerland) 13 (1) (2024)
Miguel A Terrazos Miani, Loïc Borcard, Sonja Gempeler, Christian Baumann, Pascal Bittel, Stephen L Leib, Stefan Neuenschwander, Alban Ramette
NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A Rapid, PCR-Free Method for SARS-CoV-2 Whole-Genome Sequencing in Clinical Samples. Pathogens (Basel, Switzerland) 13 (1) (2024)
Miguel A Terrazos Miani, Loïc Borcard, Sonja Gempeler, Christian Baumann, Pascal Bittel, Stephen L Leib, Stefan Neuenschwander, Alban Ramette
NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A Rapid, PCR-Free Method for SARS-CoV-2 Whole-Genome Sequencing in Clinical Samples. Pathogens (Basel, Switzerland) 13 (1) (2024)
Suraj Balakrishna, Tom Loosli, Maryam Zaheri, Paul Frischknecht, Michael Huber, Katharina Kusejko, Sabine Yerly, Karoline Leuzinger, Matthieu Perreau, Alban Ramette, Chris Wymant, Christophe Fraser, Paul Kellam, Astrid Gall, Hans H Hirsch, Marcel Stoeckle, Andri Rauch, Matthias Cavassini, Enos Bernasconi, Julia Notter, Alexandra Calmy, Huldrych F Gunthard, Karin J Metzner, Roger D Kouyos
Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1. The Journal of antimicrobial chemotherapy 78 (3) (2023)
Thomas C Scheier, J Franz, M Boumasmoud, F Andreoni, B Chakrakodi, B Duvnjak, A Egli, W Zingg, Alban Ramette, A Wolfensberger, R D Kouyos, Silvio Daniel Brugger
Fourier-transform infrared spectroscopy for typing of vancomycin-resistant Enterococcus faecium : performance analysis and outbreak investigation. Microbiology spectrum (2023)
Suraj Balakrishna, Tom Loosli, Maryam Zaheri, Paul Frischknecht, Michael Huber, Katharina Kusejko, Sabine Yerly, Karoline Leuzinger, Matthieu Perreau, Alban Ramette, Chris Wymant, Christophe Fraser, Paul Kellam, Astrid Gall, Hans H Hirsch, Marcel Stoeckle, Andri Rauch, Matthias Cavassini, Enos Bernasconi, Julia Notter, Alexandra Calmy, Huldrych F Gunthard, Karin J Metzner, Roger D Kouyos
Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1. The Journal of antimicrobial chemotherapy (2023)
C Grädel, N R Ireddy, M C Koch, C Baumann, M A Terrazos Miani, M T Barbani, J Steinlin-Schopfer, F Suter-Riniker, Stephen L Leib, Alban Ramette
Genome Sequences of Rare Human Enterovirus Genotypes Recovered from Clinical Respiratory Samples in Bern, Switzerland. Microbiology resource announcements 11 (9) (2022)
Sandra E Chaudron, Christine Leemann, Katharina Kusejko, Huyen Nguyen, Nadine Tschumi, Alex Marzel, Michael Huber, Jürg Böni, Matthieu Perreau, Thomas Klimkait, Sabine Yerly, Alban Ramette, Hans H Hirsch, Andri Rauch, Alexandra Calmy, Pietro Vernazza, Enos Bernasconi, Matthias Cavassini, Karin J Metzner, Roger D Kouyos, Huldrych F Günthard, null null
A Systematic Molecular Epidemiology Screen Reveals Numerous Human Immunodeficiency Virus (HIV) Type 1 Superinfections in the Swiss HIV Cohort Study. The Journal of infectious diseases 226 (7) (2022)
Marco Labarile, Tom Loosli, Marius Zeeb, Katharina Kusejko, Michael Huber, Hans H Hirsch, Matthieu Perreau, Alban Ramette, Sabine Yerly, Matthias Cavassini, Manuel Battegay, Andri Rauch, Alexandra Calmy, Julia Notter, Enos Bernasconi, Christoph Fux, Huldrych F Günthard, Chloé Pasin, Roger D Kouyos, null null
Quantifying and predicting ongoing Human Immunodeficiency Virus Type 1 (HIV-1) transmission dynamics in Switzerland using a distance-based clustering approach. The Journal of infectious diseases (2022)
Jessy J Duran Ramirez, Tala Ballouz, Huyen Nguyen, Katharina Kusejko, Sandra E Chaudron, Michael Huber, Hans H Hirsch, Matthieu Perreau, Alban Ramette, Sabine Yerly, Matthias Cavassini, Marcel Stöckle, Hansjakob Furrer, Pietro Vernazza, Enos Bernasconi, Huldrych F Günthard, Roger D Kouyos, null null
Increasing Frequency and Transmission of HIV-1 Non-B Subtypes among Men Who Have Sex with Men in the Swiss HIV Cohort Study. The Journal of infectious diseases (2021)
Fanny Wegner, Tim Roloff, Michael Huber, Samuel Cordey, Alban Ramette, Yannick Gerth, Claire Bertelli, Madlen Stange, Helena M B Seth-Smith, Alfredo Mari, Karoline Leuzinger, Lorenzo Cerutti, Keith Harshman, Ioannis Xenarios, Philippe Le Mercier, Pascal Bittel, Stefan Neuenschwander, Onya Opota, Jonas Fuchs, Marcus Panning, Charlotte Michel, Marie Hallin, Thomas Demuyser, Ricardo De Mendonca, Paul Savelkoul, Jozef Dingemans, Brian M J W van der Veer, Stefan A Boers, Eric C J Claas, Jordy P M Coolen, Willem J G Melchers, Marianne Gunell, Teemu Kallonen, Tytti Vuorinen, Antti J Hakanen, Eva Bernhoff, Marit Andrea Klokkhammer Hetland, Hadar Golan Berman, Sheera Adar, Jacob Moran-Gilad, Dana G Wolf, Stephen L Leib, Oliver Nolte, Laurent Kaiser, Stefan Schmutz, Verena Kufner, Maryam Zaheri, Alexandra Trkola, Hege Vangstein Aamot, Hans H Hirsch, Gilbert Greub, Adrian Egli
External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories. Journal of clinical microbiology (2021)
Ana Rita Goncalves Cabecinhas, Tim Roloff, Madlen Stange, Claire Bertelli, Michael Huber, Alban Ramette, Chaoran Chen, Sarah A Nadeau, Yannick Gerth, Sabine Yerly, Opota Onya, Trestan Pillonel, Tobias Schuster, Cesar M J A Metzger, Jonas Sieber, Michael Bel, Nadia Wohlwend, Christian Baumann, Michel C Koch, Pascal Bittel, Karoline Leuzinger, Myrta Brunner, Franziska Suter-Riniker, Livia Berlinger, Kirstine K Søgaard, Christiane Beckmann, Christoph Noppen, Maurice Redondo, Ingrid Steffen, Helena M B Seth-Smith, Alfredo Mari, Reto Lienhard, Martin Risch, Oliver Nolte, Isabella Eckerle, Gladys Martinetti Lucchini, Emma B Hodcroft, Richard A Neher, Tanja Stadler, Hans H Hirsch, Stephen L Leib, Lorenz Risch, Laurent Kaiser, Alexandra Trkola, Gilbert Greub, Adrian Egli
SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms 9 (4) (2021)
Joel P Werren, Lukas J Troxler, Oluwaseun Rume-Abiola Oyewole, Alban Ramette, Silvio Daniel Brugger, Rémy Bruggmann, Mark van der Linden, Moon H Nahm, Ilche Gjuroski, Carlo Casanova, Julien Furrer, Markus Hilty
Carbon Source-Dependent Changes of the Structure of Streptococcus pneumoniae Capsular Polysaccharide with Serotype 6F. International journal of molecular sciences 22 (9) (2021)
Wasimuddin Wasimuddin, Klaus Schlaeppi, Francesca Ronchi, Stephen L Leib, Matthias Erb, Alban Ramette
Evaluation of primer pairs for microbiome profiling from soils to humans within the One Health framework. Molecular ecology resources 20 (6) (2020)
Franziska Hufsky, Niko Beerenwinkel, Irmtraud M Meyer, Simon Roux, Georgia May Cook, Cormac M Kinsella, Kevin Lamkiewicz, Mike Marquet, David F Nieuwenhuijse, Ingrida Olendraite, Sofia Paraskevopoulou, Francesca Young, Ronald Dijkman, Bashar Ibrahim, Jenna Kelly, Philippe Le Mercier, Manja Marz, Alban Ramette, Volker Thiel
The International Virus Bioinformatics Meeting 2020. Viruses 12 (12) (2020)
Carole Grädel, Miguel A Terrazos, Christian Baumann, Maria Teresa Barbani, Stefan Neuenschwander, Stephen L Leib, Franziska Suter-Riniker, Alban Ramette
Whole-Genome Sequencing of Human Enteroviruses from Clinical Samples by Nanopore Direct RNA Sequencing. Viruses 12 (8) (2020)
Stefan Moritz Neuenschwander, Miguel Angel Terrazos Miani, Heiko Amlang, Carmen Perroulaz, Pascal Bittel, Carlo Casanova, Sara Droz, Jean-Pierre Flandrois, Stephen L Leib, Franziska Suter-Riniker, Alban Ramette
A Sample-to-Report Solution for Taxonomic Identification of Cultured Bacteria in the Clinical Setting Based on Nanopore Sequencing. Journal of clinical microbiology 58 (6) (2020)
Joyce Odeke Akello, Richard Kamgang, Maria Teresa Barbani, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette
Epidemiology of Human Adenoviruses: A 20-Year Retrospective Observational Study in Hospitalized Patients in Bern, Switzerland. Clinical epidemiology 12 (2020)
Sarah Flohr, Alban Ramette, Philipp K A Agyeman, Andrea Duppenthaler, Cordula Scherer, Peter M Keller, Christoph Aebi
Recurrent Mycobacterium chelonae Skin Infection Unmasked as Factitious Disorder Using Bacterial Whole Genome Sequence Analysis. Open forum infectious diseases 7 (11) (2020)
David R Cameron, Alban Ramette, Josef Prazak, José Entenza, Matthias Haenggi, Yok-Ai Que, Grégory Resch
Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Strain AW7, Isolated from a Patient with Bacteremia. Microbiology resource announcements 8 (40) (2019)
Carole Grädel, Miguel Angel Terrazos Miani, Maria Teresa Barbani, Stephen L Leib, Franziska Suter-Riniker, Alban Ramette
Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells. Genes 10 (9) (2019)
Alban Ramette, A Kronenberg, null null
Prevalence of carbapenem-resistant Acinetobacter baumannii from 2005 to 2016 in Switzerland. BMC infectious diseases 18 (1) (2018)
Massimiliano Molari, Katja Guilini, Christian Lott, Miriam Weber, Dirk de Beer, Stefanie Meyer, Alban Ramette, Gunter Wegener, Frank Wenzhöfer, Daniel Martin, Tamara Cibic, Cinzia De Vittor, Ann Vanreusel, Antje Boetius
CO2 leakage alters biogeochemical and ecological functions of submarine sands. Science advances 4 (2) (2018)
Jingying Wang, Alban Ramette, Maja Jurca, Myrofora Goutaki, Caroline S Beardsmore, Claudia Elisabeth Kuehni
Breastfeeding and respiratory tract infections during the first 2 years of life. ERJ open research 3 (2) (2017)
Gerdhard L Jessen, Anna Lichtschlag, Alban Ramette, Silvio Pantoja, Pamela E Rossel, Carsten J Schubert, Ulrich Struck, Antje Boetius
Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea). Science advances 3 (2) (2017)
S Emil Ruff, Jennifer F Biddle, Andreas P Teske, Katrin Knittel, Antje Boetius, Alban Ramette
Global dispersion and local diversification of the methane seep microbiome. Proceedings of the National Academy of Sciences of the United States of America 112 (13) (2015)

Alban Ramette.css-eqlu8i{font-size:small;padding-left:4px;} (A Ramette)

Publication Activity (10 Years)

Top Topics

Top Venues

Alban Ramette (A Ramette)