Roger D Kouyos (Roger Kouyos, R D Kouyos)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 56

Top Topics

Men Who Have Sex With Men

Antiretroviral Therapy

Human Immunodeficiency Virus

Top Venues

PLoS computational biology

The Journal of experimental medicine

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Matthias Egger, Mamatha Sauermann, Tom Loosli, Stefanie Hossmann, Selma Riedo, Niko Beerenwinkel, Antoine Jaquet, Albert Minga, Jeremy L Ross, Jennifer Giandhari, Roger D Kouyos, Richard Lessells
HIV-1 subtype-specific drug resistance on dolutegravir-based antiretroviral therapy: protocol for a multicentre longitudinal study (DTG RESIST). medRxiv : the preprint server for health sciences (2024)
Irene A Abela, Magdalena Schwarzmüller, Agne Ulyte, Thomas Radtke, Sarah R Haile, Priska Ammann, Alessia Raineri, Sonja Rueegg, Selina Epp, Christoph Berger, Jürg Böni, Amapola Manrique, Annette Audigé, Michael Huber, Peter W Schreiber, Thomas C Scheier, Jan S Fehr, Jacqueline Weber, Peter Rusert, Huldrych F Gunthard, Roger D Kouyos, Milo Alan Puhan, Susi Kriemler, Alexandra Trkola, Chloé Pasin
Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection. mBio 15 (2) (2024)
Irene A Abela, Magdalena Schwarzmüller, Agne Ulyte, Thomas Radtke, Sarah R Haile, Priska Ammann, Alessia Raineri, Sonja Rueegg, Selina Epp, Christoph Berger, Jürg Böni, Amapola Manrique, Annette Audigé, Michael Huber, Peter W Schreiber, Thomas C Scheier, Jan S Fehr, Jacqueline Weber, Peter Rusert, Huldrych F Gunthard, Roger D Kouyos, Milo Alan Puhan, Susi Kriemler, Alexandra Trkola, Chloé Pasin
Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection. mBio 15 (2) (2024)
Irene A Abela, Magdalena Schwarzmüller, Agne Ulyte, Thomas Radtke, Sarah R Haile, Priska Ammann, Alessia Raineri, Sonja Rueegg, Selina Epp, Christoph Berger, Jürg Böni, Amapola Manrique, Annette Audigé, Michael Huber, Peter W Schreiber, Thomas C Scheier, Jan S Fehr, Jacqueline Weber, Peter Rusert, Huldrych F Gunthard, Roger D Kouyos, Milo Alan Puhan, Susi Kriemler, Alexandra Trkola, Chloé Pasin
Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection. mBio (2024)
Matthias Egger, Mamatha Sauermann, Tom Loosli, Stefanie Hossmann, Selma Riedo, Niko Beerenwinkel, Antoine Jaquet, Albert Minga, Jeremy L Ross, Jennifer Giandhari, Roger D Kouyos, Richard Lessells
HIV-1 subtype-specific drug resistance on dolutegravir-based antiretroviral therapy: protocol for a multicentre longitudinal study (DTG RESIST). medRxiv : the preprint server for health sciences (2024)
Sonja Fernbach, Nina K Mair, Irene A Abela, Kevin Groen, Roger Kuratli, Marie Lork, Christian W Thorball, Enos Bernasconi, Paraskevas Filippidis, Karoline Leuzinger, Julia Notter, Andri Rauch, Hans H Hirsch, Michael Huber, Huldrych F Gunthard, Jacques Fellay, Roger D Kouyos, Benjamin G Hale, null null
Loss of tolerance precedes triggering and lifelong persistence of pathogenic type I interferon autoantibodies. The Journal of experimental medicine 221 (9) (2024)
Nadia Neuner-Jehle, Marius Zeeb, Christian W Thorball, Jacques Fellay, Karin J Metzner, Paul Frischknecht, Kathrin Neumann, Christine Leeman, Andri Rauch, Marcel Stöckle, Michael Huber, Matthieu Perreau, Enos Bernasconi, Julia Notter, Matthias Hoffmann, Karoline Leuzinger, Huldrych F Günthard, Chloé Pasin, Roger D Kouyos, null null
Using viral diversity to identify HIV-1 variants under HLA-dependent selection in a systematic viral genome-wide screen. PLoS pathogens 20 (8) (2024)
Sonja Fernbach, Nina K Mair, Irene A Abela, Kevin Groen, Roger Kuratli, Marie Lork, Christian W Thorball, Enos Bernasconi, Paraskevas Filippidis, Karoline Leuzinger, Julia Notter, Andri Rauch, Hans H Hirsch, Michael Huber, Huldrych F Gunthard, Jacques Fellay, Roger D Kouyos, Benjamin G Hale, null null
Loss of tolerance precedes triggering and lifelong persistence of pathogenic type I interferon autoantibodies. The Journal of experimental medicine 221 (9) (2024)
Irene A Abela, Magdalena Schwarzmüller, Agne Ulyte, Thomas Radtke, Sarah R Haile, Priska Ammann, Alessia Raineri, Sonja Rueegg, Selina Epp, Christoph Berger, Jürg Böni, Amapola Manrique, Annette Audigé, Michael Huber, Peter W Schreiber, Thomas C Scheier, Jan S Fehr, Jacqueline Weber, Peter Rusert, Huldrych F Gunthard, Roger D Kouyos, Milo Alan Puhan, Susi Kriemler, Alexandra Trkola, Chloé Pasin
Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection. mBio 15 (2) (2024)
Sonja Fernbach, Nina K Mair, Irene A Abela, Kevin Groen, Roger Kuratli, Marie Lork, Christian W Thorball, Enos Bernasconi, Paraskevas Filippidis, Karoline Leuzinger, Julia Notter, Andri Rauch, Hans H Hirsch, Michael Huber, Huldrych F Gunthard, Jacques Fellay, Roger D Kouyos, Benjamin G Hale, null null
Loss of tolerance precedes triggering and lifelong persistence of pathogenic type I interferon autoantibodies. The Journal of experimental medicine 221 (9) (2024)
Nadia Neuner-Jehle, Marius Zeeb, Christian W Thorball, Jacques Fellay, Karin J Metzner, Paul Frischknecht, Kathrin Neumann, Christine Leeman, Andri Rauch, Marcel Stöckle, Michael Huber, Matthieu Perreau, Enos Bernasconi, Julia Notter, Matthias Hoffmann, Karoline Leuzinger, Huldrych F Günthard, Chloé Pasin, Roger D Kouyos, null null
Using viral diversity to identify HIV-1 variants under HLA-dependent selection in a systematic viral genome-wide screen. PLoS pathogens 20 (8) (2024)
Chloé Pasin, David Garcia Nuñez, Katharina Kusejko, Anna Hachfeld, Hélène Buvelot, Matthias Cavassini, Lauro Damonti, Christoph Fux, Begoña Martinez de Tejada, Julia Notter, Alexandra Trkola, Huldrych F Gunthard, Karoline Aebi-Popp, Roger D Kouyos, Irene A Abela, null null
Impact of hormonal therapy on HIV-1 immune markers in cis women and gender minorities. HIV medicine (2024)
Sonja Fernbach, Nina K Mair, Irene A Abela, Kevin Groen, Roger Kuratli, Marie Lork, Christian W Thorball, Enos Bernasconi, Paraskevas Filippidis, Karoline Leuzinger, Julia Notter, Andri Rauch, Hans H Hirsch, Michael Huber, Huldrych F Gunthard, Jacques Fellay, Roger D Kouyos, Benjamin G Hale, null null
Loss of tolerance precedes triggering and lifelong persistence of pathogenic type I interferon autoantibodies. The Journal of experimental medicine 221 (9) (2024)
Nadia Neuner-Jehle, Marius Zeeb, Christian W Thorball, Jacques Fellay, Karin J Metzner, Paul Frischknecht, Kathrin Neumann, Christine Leeman, Andri Rauch, Marcel Stöckle, Michael Huber, Matthieu Perreau, Enos Bernasconi, Julia Notter, Matthias Hoffmann, Karoline Leuzinger, Huldrych F Günthard, Chloé Pasin, Roger D Kouyos, null null
Using viral diversity to identify HIV-1 variants under HLA-dependent selection in a systematic viral genome-wide screen. PLoS pathogens 20 (8) (2024)
Irene A Abela, Frédérique Chammartin, Alain Amstutz, Bernard Surial, Marie Ballif, Catia Marzolini, Karoline Aebi-Popp, Julia Notter, Olivier Segeral, Marcel Stoeckle, Matthias Cavassini, Enos Bernasconi, Huldrych F Gunthard, Roger D Kouyos, Chloé Pasin, null null
Gender Disparities in Statin Prescriptions in People With HIV With Low/Moderate to High Cardiovascular Risk. Open forum infectious diseases 11 (9) (2024)
Sonja Fernbach, Nina K Mair, Irene A Abela, Kevin Groen, Roger Kuratli, Marie Lork, Christian W Thorball, Enos Bernasconi, Paraskevas Filippidis, Karoline Leuzinger, Julia Notter, Andri Rauch, Hans H Hirsch, Michael Huber, Huldrych F Gunthard, Jacques Fellay, Roger D Kouyos, Benjamin G Hale, null null
Loss of tolerance precedes triggering and lifelong persistence of pathogenic type I interferon autoantibodies. The Journal of experimental medicine 221 (9) (2024)
Berit Siedentop, Viacheslav N Kachalov, Christopher Witzany, Matthias Egger, Roger D Kouyos, Sebastian Bonhoeffer
The effect of combining antibiotics on resistance: A systematic review and meta-analysis. medRxiv : the preprint server for health sciences (2023)
Patrizia Künzler-Heule, Axel Jeremias Schmidt, Katharina Fierz, Manuel Battegay, Sandra Engberg, Roger D Kouyos, Christiana Nöstlinger, Marcel Stoeckle, Charles Béguelin, Julie Delaloye, Patrick Schmid, Mathieu Rougemont, Dominique L Braun, Jan S Fehr, Dunja Nicca
Exploring group differences in the response to a sexual risk reduction intervention to prevent hepatitis C virus reinfection in HIV-infected MSM: a mixed-methods study. AIDS care (2023)
Suraj Balakrishna, Tom Loosli, Maryam Zaheri, Paul Frischknecht, Michael Huber, Katharina Kusejko, Sabine Yerly, Karoline Leuzinger, Matthieu Perreau, Alban Ramette, Chris Wymant, Christophe Fraser, Paul Kellam, Astrid Gall, Hans H Hirsch, Marcel Stoeckle, Andri Rauch, Matthias Cavassini, Enos Bernasconi, Julia Notter, Alexandra Calmy, Huldrych F Gunthard, Karin J Metzner, Roger D Kouyos
Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1. The Journal of antimicrobial chemotherapy 78 (3) (2023)
Chloé Pasin, Camila Rosat Consiglio, Jana Sanne Huisman, Ann-Marie Glasø de Lange, Hannah Peckham, Enriqueta Vallejo-Yagüe, Irene A Abela, Ulrika Islander, Nadia Neuner-Jehle, Maria Pujantell, Olivia Roth, Melanie Schirmer, Burcu Tepekule, Marius Zeeb, Anna Hachfeld, Karoline Aebi-Popp, Roger D Kouyos, Sebastian Bonhoeffer
Sex and gender in infection and immunity: addressing the bottlenecks from basic science to public health and clinical applications. Royal Society open science 10 (7) (2023)
Patrizia Künzler-Heule, Axel Jeremias Schmidt, Katharina Fierz, Manuel Battegay, Sandra Engberg, Roger D Kouyos, Christiana Nöstlinger, Marcel Stoeckle, Charles Béguelin, Julie Delaloye, Patrick Schmid, Mathieu Rougemont, Dominique L Braun, Jan S Fehr, Dunja Nicca
Exploring group differences in the response to a sexual risk reduction intervention to prevent hepatitis C virus reinfection in HIV-infected MSM: a mixed-methods study. AIDS care (2023)
Maxime Hentzien, Jaromil Frossard, Roger D Kouyos, Virginie Prendki, José Damas, Eveline Hofmann, Dominique Braun, Patrick Schmid, Enos Bernasconi, Silvio Ragozzino, Orestis Efthimiou, Cyrille Delpierre, Clotilde Allavena, Firouzé Bani-Sadr, Alexandra Calmy, null null
External validation of the Dat'AIDS score: A risk score for predicting 5-year overall mortality in people living with HIV aged 60 years or older. HIV medicine (2023)
Katharina Kusejko, Daniel Smith, Alexandra Scherrer, Paolo Paioni, Malte Kohns Vasconcelos, Karoline Aebi-Popp, Roger D Kouyos, Huldrych F Gunthard, Christian R Kahlert, null null
Migrating a Well-Established Longitudinal Cohort Database From Oracle SQL to Research Electronic Data Entry (REDCap): Data Management Research and Design Study. JMIR formative research 7 (2023)
Emily West, Marius Zeeb, Christina Grube, Herbert Kuster, Katrin Wanner, Thomas Scheier, Kathrin Neumann, Lisa Jörimann, Benjamin Hampel, Karin J Metzner, Roger D Kouyos, Dominique L Braun, Huldrych F Günthard
Sustained viral suppression with dolutegravir monotherapy over 192 weeks in patients starting combination antiretroviral therapy during primary HIV infection (EARLY-SIMPLIFIED): a randomized, controlled, multi-site, non-inferiority trial. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (2023)
Bashkim Jaha, Corinne D Schenkel, Lisa Jörimann, Michael Huber, Maryam Zaheri, Kathrin Neumann, Christine Leemann, Alexandra Calmy, Matthias Cavassini, Roger D Kouyos, Huldrych F Gunthard, Karin J Metzner, null null
Prevalence of HIV-1 drug resistance mutations in proviral DNA in the Swiss HIV Cohort Study, a retrospective study from 1995 to 2018. The Journal of antimicrobial chemotherapy (2023)
Suraj Balakrishna, Tom Loosli, Maryam Zaheri, Paul Frischknecht, Michael Huber, Katharina Kusejko, Sabine Yerly, Karoline Leuzinger, Matthieu Perreau, Alban Ramette, Chris Wymant, Christophe Fraser, Paul Kellam, Astrid Gall, Hans H Hirsch, Marcel Stoeckle, Andri Rauch, Matthias Cavassini, Enos Bernasconi, Julia Notter, Alexandra Calmy, Huldrych F Gunthard, Karin J Metzner, Roger D Kouyos
Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1. The Journal of antimicrobial chemotherapy (2023)
Jennifer Anne Brown, Anthony Hauser, Irene A Abela, Chloé Pasin, Selina Epp, Tsepang Mohloanyane, Bienvenu L Nsakala, Alexandra Trkola, Niklaus Daniel Labhardt, Roger D Kouyos, Huldrych F Gunthard
Seroprofiling of antibodies against endemic human coronaviruses and SARS-CoV-2 in an HIV cohort in Lesotho: correlates of antibody response and seropositivity. The Journal of infectious diseases (2023)
Mathilde Boumasmoud, Vanina Dengler Haunreiter, Tiziano A Schweizer, Lilly Meyer, Bhavya Chakrakodi, Peter W Schreiber, Kati Seidl, Denise Kühnert, Roger D Kouyos, Annelies S Zinkernagel
Genomic Surveillance of Vancomycin-Resistant Enterococcus faecium Reveals Spread of a Linear Plasmid Conferring a Nutrient Utilization Advantage. mBio 13 (2) (2022)
Sara Andresen, Suraj Balakrishna, Catrina Mugglin, Axel J Schmidt, Dominique L Braun, Alex Marzel, Thanh Doco Lecompte, Katharine E A Darling, Jan A Roth, Patrick Schmid, Enos Bernasconi, Huldrych F Günthard, Andri Rauch, Roger D Kouyos, Luisa Salazar-Vizcaya, null null
Unsupervised machine learning predicts future sexual behaviour and sexually transmitted infections among HIV-positive men who have sex with men. PLoS computational biology 18 (10) (2022)
Marco Labarile, Tom Loosli, Marius Zeeb, Katharina Kusejko, Michael Huber, Hans H Hirsch, Matthieu Perreau, Alban Ramette, Sabine Yerly, Matthias Cavassini, Manuel Battegay, Andri Rauch, Alexandra Calmy, Julia Notter, Enos Bernasconi, Christoph Fux, Huldrych F Günthard, Chloé Pasin, Roger D Kouyos, null null
Quantifying and predicting ongoing Human Immunodeficiency Virus Type 1 (HIV-1) transmission dynamics in Switzerland using a distance-based clustering approach. The Journal of infectious diseases (2022)
Isabella C Schoepf, Christian W Thorball, Bruno Ledergerber, Neeltje A Kootstra, Peter Reiss, Marieke Raffenberg, Tanja Engel, Dominique L Braun, Barbara Hasse, Christine Thurnheer, Catia Marzolini, Marco Seneghini, Enos Bernasconi, Matthias Cavassini, Hélène Buvelot, José R Arribas, Roger D Kouyos, Jacques Fellay, Huldrych F Günthard, Philip E Tarr
Telomere Length Declines in Persons With Human Immunodeficiency Virus Before Antiretroviral Therapy Start but Not After Viral Suppression: A Longitudinal Study Over >17 Years. The Journal of infectious diseases 225 (9) (2022)
Alexander Ring, Suraj Balakrishna, Frank Imkamp, Sara Burkard, Flurina Triet, Flurina Brunschweiler, Christina Grube, Rebecca Bodmer, Roger D Kouyos, Huldrych F Günthard, Dominique L Braun
High Rates of Asymptomatic Mycoplasma genitalium Infections With High Proportion of Genotypic Resistance to First-Line Macrolide Treatment Among Men Who Have Sex With Men Enrolled in the Zurich Primary HIV Infection Study. Open forum infectious diseases 9 (6) (2022)
Susana Posada Céspedes, Gert U van Zyl, Hesam Montazeri, Jack Kuipers, Soo-Yon Rhee, Roger D Kouyos, Huldrych F Gunthard, Niko Beerenwinkel
Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS computational biology 17 (9) (2021)
Huyen Nguyen, Christian Wandell Thorball, Jacques Fellay, Jürg Böni, Sabine Yerly, Matthieu Perreau, Hans H Hirsch, Katharina Kusejko, Maria Christine Thurnheer, Manuel Battegay, Matthias Cavassini, Christian R Kahlert, Enos Bernasconi, Huldrych F Günthard, Roger D Kouyos, null null
Systematic screening of viral and human genetic variation identifies antiretroviral resistance and immune escape link. eLife 10 (2021)
Frédérique Hovaguimian, Huldrych F Gunthard, Christoph Hauser, Anna Conen, Enos Bernasconi, Alexandra Calmy, Matthias Cavassini, Marco Seneghini, Alex Marzel, Henriette Heinrich, Alexandra Scherrer, Julien Riou, Adrian Spoerri, Kurt Schmidlin, Suraj Balakrishna, Dominique L Braun, Silvana K Rampini, Jan S Fehr, Roger D Kouyos, null null
Data linkage to evaluate the long-term risk of HIV infection in individuals seeking post-exposure prophylaxis. Nature communications 12 (1) (2021)
Alexandra U Scherrer, Anna Traytel, Dominique L Braun, Alexandra Calmy, Manuel Battegay, Matthias Cavassini, Hansjakob Furrer, Patrick Schmid, Enos Bernasconi, Marcel Stoeckle, Christian Kahlert, Alexandra Trkola, Roger D Kouyos, Philip Tarr, Catia Marzolini, Gilles Wandeler, Jacques Fellay, Heiner Bucher, Sabine Yerly, Franziska Suter, Hans Hirsch, Michael Huber, Günter Dollenmaier, Matthieu Perreau, Gladys Martinetti, Andri Rauch, Huldrych F Günthard, null null
Cohort Profile Update: The Swiss HIV Cohort Study (SHCS). International journal of epidemiology (2021)
Jessy J Duran Ramirez, Tala Ballouz, Huyen Nguyen, Katharina Kusejko, Sandra E Chaudron, Michael Huber, Hans H Hirsch, Matthieu Perreau, Alban Ramette, Sabine Yerly, Matthias Cavassini, Marcel Stöckle, Hansjakob Furrer, Pietro Vernazza, Enos Bernasconi, Huldrych F Günthard, Roger D Kouyos, null null
Increasing Frequency and Transmission of HIV-1 Non-B Subtypes among Men Who Have Sex with Men in the Swiss HIV Cohort Study. The Journal of infectious diseases (2021)
Suraj Balakrishna, Luisa Salazar-Vizcaya, Axel J Schmidt, Viacheslav N Kachalov, Katharina Kusejko, Maria Christine Thurnheer, Jan A Roth, Dunja Nicca, Matthias Cavassini, Manuel Battegay, Patrick Schmid, Enos Bernasconi, Huldrych F Gunthard, Andri Rauch, Roger D Kouyos, null null
Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS computational biology 17 (10) (2021)
Irene A Abela, Chloé Pasin, Magdalena Schwarzmüller, Selina Epp, Michèle E Sickmann, Merle M Schanz, Peter Rusert, Jacqueline Weber, Stefan Schmutz, Annette Audigé, Liridona Maliqi, Annika Hunziker, Maria C Hesselman, Cyrille R Niklaus, Jochen Gottschalk, Eméry Schindler, Alexander Wepf, Urs Karrer, Aline Wolfensberger, Silvana K Rampini, Patrick Michael Meyer Sauteur, Christoph Berger, Michael Huber, Katharina Kusejko, Dominique L Braun, Maddalena Marconato, Markus Gabriel Manz, Beat M Frey, Huldrych F Gunthard, Roger D Kouyos, Alexandra Trkola
Multifactorial seroprofiling dissects the contribution of pre-existing human coronaviruses responses to SARS-CoV-2 immunity. Nature communications 12 (1) (2021)
Nikolas Friedrich, Emanuel Stiegeler, Matthias Glögl, Thomas Lemmin, Simon Hansen, Claus Kadelka, Yufan Wu, Patrick Ernst, Liridona Maliqi, Caio Foulkes, Mylène Morin, Mustafa Eroglu, Thomas Liechti, Branislav Ivan, Thomas Reinberg, Jonas V Schaefer, Umut Karakus, Stephan Ursprung, Axel Mann, Peter Rusert, Roger D Kouyos, John A Robinson, Huldrych F Gunthard, Andreas Plückthun, Alexandra Trkola
Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization. Nature communications 12 (1) (2021)
Viacheslav N Kachalov, Huyen Nguyen, Suraj Balakrishna, Luisa Salazar-Vizcaya, Rami Sommerstein, Stefan P Kuster, Anthony Hauser, Pia Abel Zur Wiesch, Eili Y Klein, Roger D Kouyos
Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS computational biology 17 (1) (2021)
Burcu Tepekule, Anthony Hauser, Viacheslav N Kachalov, Sara Andresen, Thomas C Scheier, Peter W Schreiber, Huldrych F Gunthard, Roger D Kouyos
Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19. PLoS computational biology 17 (1) (2021)
Jennifer Anne Brown, Herbert A Mbunkah, Thabo Ishmael Lejone, Isaac Ringera, Molisana Cheleboi, Thomas Klimkait, Karin J Metzner, Huldrych F Gunthard, Niklaus Daniel Labhardt, Roger D Kouyos, Nadine Tschumi
Emergence of Human Immunodeficiency Virus-1 Drug Resistance During the 3-Month World Health Organization-Recommended Enhanced Adherence Counseling Period in the CART-1 Cohort Study. Open forum infectious diseases 8 (5) (2021)
Anthony Hauser, Katharina Kusejko, Leigh F Johnson, Huldrych F Gunthard, Julien Riou, Gilles Wandeler, Matthias Egger, Roger D Kouyos
Impact of scaling up dolutegravir on antiretroviral resistance in South Africa: A modeling study. PLoS medicine 17 (12) (2020)
Katharina Kusejko, Huldrych F Gunthard, Gregory S Olson, Kyra Zens, Katharine Darling, Nina Khanna, Hansjakob Furrer, Pauline Vetter, Enos Bernasconi, Pietro Vernazza, Matthias Hoffmann, Roger D Kouyos, Johannes Nemeth, null null
Diagnosis of latent tuberculosis infection is associated with reduced HIV viral load and lower risk for opportunistic infections in people living with HIV. PLoS biology 18 (12) (2020)
Chenjie Wan, Nadine Tschumi, Venelin Mitov, François Blanquart, Susana Posada Céspedes, Teja Turk, Kathrin Neumann, Niko Beerenwinkel, Jasmina Bogojeska, Jacques Fellay, Volker Roth, Katharina Kusejko, Matthieu Perreau, Thomas Klimkait, Sabine Yerly, Manuel Battegay, Laura Walti, Alexandra Calmy, Pietro Vernazza, Enos Bernasconi, Matthias Cavassini, Karin J Metzner, Huldrych F Gunthard, Roger D Kouyos, null null
Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART. Nature communications 11 (1) (2020)
Burcu Tepekule, Pia Abel Zur Wiesch, Roger D Kouyos, Sebastian Bonhoeffer
Quantifying the impact of treatment history on plasmid-mediated resistance evolution in human gut microbiota. Proceedings of the National Academy of Sciences of the United States of America 116 (46) (2019)
Nadine Tschumi, Chantal von Siebenthal, Valentina Vongrad, Teja Turk, Kathrin Neumann, Niko Beerenwinkel, Jasmina Bogojeska, Jacques Fellay, Volker Roth, Yik Lim Kok, Christian W Thorball, Alessandro Borghesi, Sonali Parbhoo, Mario Wieser, Katharina Kusejko, Matthieu Perreau, Thomas Klimkait, Sabine Yerly, Manuel Battegay, Andri Rauch, Matthias Hoffmann, Enos Bernasconi, Matthias Cavassini, Roger D Kouyos, Huldrych F Gunthard, Karin J Metzner, null null
Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART. Nature communications 10 (1) (2019)
Anthony Hauser, Katharina Kusejko, Leigh F Johnson, Gilles Wandeler, Julien Riou, Fardo Goldstein, Matthias Egger, Roger D Kouyos
Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa. PLoS computational biology 15 (6) (2019)
Claus Kadelka, Thomas Liechti, Hanna Ebner, Merle Schanz, Peter Rusert, Nikolas Friedrich, Emanuel Stiegeler, Dominique L Braun, Michael Huber, Alexandra U Scherrer, Jacqueline Weber, Therese Uhr, Herbert Kuster, Benjamin Misselwitz, Matthias Cavassini, Enos Bernasconi, Matthias Hoffmann, Alexandra Calmy, Manuel Battegay, Andri Rauch, Sabine Yerly, Vincent Aubert, Thomas Klimkait, Katharina Kusejko, Roger D Kouyos, Huldrych F Gunthard, Alexandra Trkola, null null
Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity. The Journal of experimental medicine 215 (6) (2018)
Denise Kühnert, Roger D Kouyos, George Shirreff, Jūlija Pečerska, Alexandra U Scherrer, Katharina Kusejko, Sabine Yerly, Thomas Klimkait, Vincent Aubert, Huldrych F Günthard, Tanja Stadler, Sebastian Bonhoeffer, null null
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. PLoS pathogens 14 (2) (2018)
Katharina Kusejko, A Marzel, B Hampel, N Bachmann, H Nguyen, J Fehr, D L Braun, M Battegay, E Bernasconi, A Calmy, M Cavassini, M Hoffmann, J Böni, S Yerly, T Klimkait, M Perreau, A Rauch, H F Günthard, Roger D Kouyos, null null
Quantifying the drivers of HIV transmission and prevention in men who have sex with men: a population model-based analysis in Switzerland. HIV medicine 19 (10) (2018)
Sinead E Morris, Andrew J Yates, Rik L de Swart, Rory D De Vries, Michael Joseph Mina, Ashley N Nelson, Wen-Hsuan Wendy Lin, Roger D Kouyos, Diane E Griffin, Bryan T Grenfell
Modeling the measles paradox reveals the importance of cellular immunity in regulating viral clearance. PLoS pathogens 14 (12) (2018)
Katharina Kusejko, Claus Kadelka, Alex Marzel, Manuel Battegay, Enos Bernasconi, Alexandra Calmy, Matthias Cavassini, Matthias Hoffmann, Jürg Böni, Sabine Yerly, Thomas Klimkait, Matthieu Perreau, Andri Rauch, Huldrych F Günthard, Roger D Kouyos, null null
Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study. Virus evolution 4 (2) (2018)
Teja Turk, Nadine Tschumi, Claus Kadelka, Jürg Böni, Sabine Yerly, Vincent Aubert, Thomas Klimkait, Manuel Battegay, Enos Bernasconi, Alexandra Calmy, Matthias Cavassini, Hansjakob Furrer, Matthias Hoffmann, Huldrych F Günthard, Roger D Kouyos, null null
Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis. eLife 6 (2017)
David A Rasmussen, Roger D Kouyos, Huldrych F Günthard, Tanja Stadler
Phylodynamics on local sexual contact networks. PLoS computational biology 13 (3) (2017)